CompoundList

Structure search

Draw a molecule, paste a SMILES string, molfile or InChI, or upload a .mol file. Then search millions of chemicals by exact match, substructure or similarity.

Search by name or CAS instead
Loading the structure editor

It is a large download the first time, then it is cached.

Draw with the tools on the left, or paste a structure with Ctrl+V inside the editor.
Search type

Compounds that look alike, ranked by Tanimoto score

80%
50%, broad100%, identical
Molecular weight
to

Signed out: first 20 results. Sign in free for up to 500.

Start from an example

How the three search types work

Pick the one that matches your question. You can switch and search again without redrawing.

Exact

Finds the very same compound from its standard InChIKey, and lists stereoisomers, isotope-labelled forms and charged forms separately.

Substructure

Finds every compound that contains your drawing, for example all pyridines or every molecule with a carboxylic acid on a benzene ring. Matches are shaded in the results.

Similarity

Ranks compounds by Tanimoto similarity of Morgan fingerprints. 100% means an identical fingerprint, around 70% still shares most of the scaffold.

The drawing editor is Ketcher by EPAM Systems (Apache 2.0 licence). Signed-out searches show the first 20 results, a free account shows up to 500.