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Murcko scaffold

5-(Pyridin-3-yl)pyrimidine scaffold

107 chemicals on CompoundList share this ring system.

Rings
2
Scaffold atoms
12
Chemicals
107
With full pages
3
Scaffold SMILES

c1cncc(-c2cncnc2)c1

A Bemis-Murcko scaffold is what remains of a molecule when every side chain is removed: the rings and the chains that link them. Chemicals that share a scaffold often belong to the same compound series, which helps when you look for analogues, alternative suppliers or related building blocks.

Substructure search with this scaffoldOpen the 5-(Pyridin-3-yl)pyrimidine page
Murcko scaffold c1cncc(-c2cncnc2)c1

Computed from the structures of the chemicals listed here. Stereo and charges are removed before the scaffold is taken.

Chemicals with this scaffold

Open one to see its structure, properties and suppliers.

Showing 1 to 48 of 107 chemicals

2,4-Di-tert-butoxy-5-(pyridin-3-yl)pyrimidine chemical structure, C17H23N3O2, CAS 127236-15-1
2,4-Di-tert-butoxy-5-(pyridin-3-yl)pyrimidine
CAS 127236-15-1C17H23N3O2
2-Bromo-5-(5-pyrimidyl)pyridine chemical structure, C9H6BrN3, CAS 475275-71-9
2-Bromo-5-(5-pyrimidyl)pyridine
CAS 475275-71-9C9H6BrN3
5-(6-Methoxypyridin-3-yl)pyrimidine chemical structure, C10H9N3O, CAS 475275-80-0
5-(6-Methoxypyridin-3-yl)pyrimidine
CAS 475275-80-0C10H9N3O
5-(Pyridin-3-yl)pyrimidin-4-amine chemical structure, C9H8N4, CAS 22433-63-2
5-(Pyridin-3-yl)pyrimidin-4-amine
CAS 22433-63-2C9H8N4
5-(Pyridin-3-yl)pyrimidine chemical structure, C9H7N3, CAS 73082-69-6
5-(Pyridin-3-yl)pyrimidine
CAS 73082-69-6C9H7N3
5-(Pyridin-3-yl)pyrimidin-2-amine chemical structure, C9H8N4, CAS 1111112-11-8
5-(Pyridin-3-yl)pyrimidin-2-amine
CAS 1111112-11-8C9H8N4
5-(Pyrimidin-5-yl)pyridin-2-amine chemical structure, C9H8N4, CAS 827588-84-1
5-(Pyrimidin-5-yl)pyridin-2-amine
CAS 827588-84-1C9H8N4
Methyl 5-(pyrimidin-5-yl)nicotinate chemical structure, C11H9N3O2, CAS 893740-21-1
Methyl 5-(pyrimidin-5-yl)nicotinate
CAS 893740-21-1C11H9N3O2
5-(Pyrimidin-5-yl)nicotinic acid chemical structure, C10H7N3O2, CAS 893740-59-5
5-(Pyrimidin-5-yl)nicotinic acid
CAS 893740-59-5C10H7N3O2
4-Methyl-5-(pyridin-3-yl)pyrimidin-2-amine chemical structure, C10H10N4, CAS 200627-69-6
4-Methyl-5-(pyridin-3-yl)pyrimidin-2-amine
CAS 200627-69-6C10H10N4
2-Bromo-5-(2-amino-5-pyrimidyl)pyridine chemical structure, C9H7BrN4, CAS 1142193-95-0
2-Bromo-5-(2-amino-5-pyrimidyl)pyridine
CAS 1142193-95-0C9H7BrN4
2-Amino-5-(2-amino-5-pyrimidyl)pyridine chemical structure, C9H9N5, CAS 1159822-01-1
2-Amino-5-(2-amino-5-pyrimidyl)pyridine
CAS 1159822-01-1C9H9N5
2-Chloro-5-(pyridin-3-yl)pyrimidine chemical structure, C9H6ClN3, CAS 1211588-38-3
2-Chloro-5-(pyridin-3-yl)pyrimidine
CAS 1211588-38-3C9H6ClN3
2,4-Dichloro-5-(pyridin-3-yl)pyrimidine chemical structure, C9H5Cl2N3, CAS 1214359-45-1
2,4-Dichloro-5-(pyridin-3-yl)pyrimidine
CAS 1214359-45-1C9H5Cl2N3
2,4-Difluoro-5-(pyridin-3-yl)pyrimidine chemical structure, C9H5F2N3, CAS 1214370-43-0
2,4-Difluoro-5-(pyridin-3-yl)pyrimidine
CAS 1214370-43-0C9H5F2N3
5-(6-Methoxypyridin-3-yl)pyrimidin-2-amine chemical structure, C10H10N4O, CAS 1111112-03-8
5-(6-Methoxypyridin-3-yl)pyrimidin-2-amine
CAS 1111112-03-8C10H10N4O
3-(2,4-Dimethoxy-pyrimidin-5-yl)-pyridine-2-carbonitrile chemical structure, C12H10N4O2, CAS 952403-03-1
3-(2,4-Dimethoxy-pyrimidin-5-yl)-pyridine-2-carbonitrile
CAS 952403-03-1C12H10N4O2
3-(Pyrimidin-5-yl)pyridin-4-amine chemical structure, C9H8N4, CAS 1339398-96-7
3-(Pyrimidin-5-yl)pyridin-4-amine
CAS 1339398-96-7C9H8N4
3-(Pyrimidin-5-yl)pyridin-2-amine chemical structure, C9H8N4, CAS 1339008-94-4
3-(Pyrimidin-5-yl)pyridin-2-amine
CAS 1339008-94-4C9H8N4
2-Bromo-5-(3-pyridyl)pyrimidine chemical structure, C9H6BrN3, CAS 1353856-22-0
2-Bromo-5-(3-pyridyl)pyrimidine
CAS 1353856-22-0C9H6BrN3
3-Bromo-5-(5-pyrimidyl)pyridine chemical structure, C9H6BrN3, CAS 1314355-76-4
3-Bromo-5-(5-pyrimidyl)pyridine
CAS 1314355-76-4C9H6BrN3
5-(Pyrimidin-5-yl)pyridin-3-amine chemical structure, C9H8N4, CAS 1255637-02-5
5-(Pyrimidin-5-yl)pyridin-3-amine
CAS 1255637-02-5C9H8N4
5-(Pyrimidin-5-yl)pyridin-3-ol chemical structure, C9H7N3O, CAS 1314354-82-9
5-(Pyrimidin-5-yl)pyridin-3-ol
CAS 1314354-82-9C9H7N3O
5-(5-Pyrimidyl)pyridine-3-boronic acid chemical structure, C9H8BN3O2, CAS 2225180-16-3
5-(5-Pyrimidyl)pyridine-3-boronic acid
CAS 2225180-16-3C9H8BN3O2