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Murcko scaffold

Ring system with 2 rings and 13 atoms

33 chemicals on CompoundList share this ring system.

Rings
2
Scaffold atoms
13
Chemicals
33
With full pages
6
Scaffold SMILES

O=c1ncccn1C1CCCCO1

A Bemis-Murcko scaffold is what remains of a molecule when every side chain is removed: the rings and the chains that link them. Chemicals that share a scaffold often belong to the same compound series, which helps when you look for analogues, alternative suppliers or related building blocks.

Substructure search with this scaffold
Murcko scaffold O=c1ncccn1C1CCCCO1

Computed from the structures of the chemicals listed here. Stereo and charges are removed before the scaffold is taken.

Chemicals with this scaffold

Open one to see its structure, properties and suppliers.

Showing 1 to 33 of 33 chemicals

Cytosine, 5-bromo-1-(tetrahydropyran-2-yl)- chemical structure, C9H12BrN3O2, CAS 5580-94-9
Cytosine, 5-bromo-1-(tetrahydropyran-2-yl)-
CAS 5580-94-9C9H12BrN3O2
Bagougeramine A chemical structure, C17H28N10O7, CAS 104840-35-9
Bagougeramine A
CAS 104840-35-9C17H28N10O7
Bagougeramine B chemical structure, C24H44N12O7, CAS 104840-34-8
Bagougeramine B
CAS 104840-34-8C24H44N12O7
Pentopyranine A chemical structure, C9H13N3O3, CAS 39057-02-8
Pentopyranine A
CAS 39057-02-8C9H13N3O3
1-(4-Amino-2-oxo-1(2H)-pyrimidinyl)-1-deoxy-beta-D-glucopyranuronic acid chemical structure, C10H13N3O7, CAS 59862-05-4
1-(4-Amino-2-oxo-1(2H)-pyrimidinyl)-1-deoxy-beta-D-glucopyranuronic acid
CAS 59862-05-4C10H13N3O7
4-Amino-1-(4,5-dihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl)pyrimidin-2(1H)-one chemical structure, C10H15N3O5, CAS 6027-65-2
4-Amino-1-(4,5-dihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl)pyrimidin-2(1H)-one
CAS 6027-65-2C10H15N3O5
4-Amino-1-(tetrahydro-2H-pyran-2-yl)pyrimidin-2(1H)-one chemical structure, C9H13N3O2, CAS 5000-33-9
4-Amino-1-(tetrahydro-2H-pyran-2-yl)pyrimidin-2(1H)-one
CAS 5000-33-9C9H13N3O2
4-Methoxy-1-(oxan-2-yl)pyrimidin-2-one chemical structure, C10H14N2O3, CAS 5580-87-0
4-Methoxy-1-(oxan-2-yl)pyrimidin-2-one
CAS 5580-87-0C10H14N2O3
4-Amino-5-methyl-1-(tetrahydro-2H-pyran-2-yl)pyrimidin-2(1H)-one chemical structure, C10H15N3O2, CAS 5580-93-8
4-Amino-5-methyl-1-(tetrahydro-2H-pyran-2-yl)pyrimidin-2(1H)-one
CAS 5580-93-8C10H15N3O2
4-(Methylamino)-1-(tetrahydro-2H-pyran-2-yl)pyrimidin-2(1H)-one chemical structure, C10H15N3O2, CAS 5580-92-7
4-(Methylamino)-1-(tetrahydro-2H-pyran-2-yl)pyrimidin-2(1H)-one
CAS 5580-92-7C10H15N3O2
5-Iodo-4-methoxy-1-(tetrahydro-2H-pyran-2-yl)pyrimidin-2(1H)-one chemical structure, C10H13IN2O3, CAS 5580-88-1
5-Iodo-4-methoxy-1-(tetrahydro-2H-pyran-2-yl)pyrimidin-2(1H)-one
CAS 5580-88-1C10H13IN2O3
4-Amino-5-iodo-1-(tetrahydro-2H-pyran-2-yl)pyrimidin-2(1H)-one chemical structure, C9H12IN3O2, CAS 5580-95-0
4-Amino-5-iodo-1-(tetrahydro-2H-pyran-2-yl)pyrimidin-2(1H)-one
CAS 5580-95-0C9H12IN3O2
4-Amino-1-(2-amino-2-deoxyhexopyranosyl)pyrimidin-2(1H)-one chemical structure, C10H16N4O5, CAS 34948-64-6
4-Amino-1-(2-amino-2-deoxyhexopyranosyl)pyrimidin-2(1H)-one
CAS 34948-64-6C10H16N4O5
[3,4,5-Triacetyloxy-6-(4-methoxy-2-oxopyrimidin-1-yl)oxan-2-yl]methyl acetate chemical structure, C19H24N2O11, CAS 4603-96-7
[3,4,5-Triacetyloxy-6-(4-methoxy-2-oxopyrimidin-1-yl)oxan-2-yl]methyl acetate
CAS 4603-96-7C19H24N2O11
[6-(4-Acetamido-2-oxopyrimidin-1-yl)-5-(acetylcarbamoylamino)-3,4-diacetyloxyoxan-2-yl]methyl acetate chemical structure, C21H27N5O11, CAS 7494-99-7
[6-(4-Acetamido-2-oxopyrimidin-1-yl)-5-(acetylcarbamoylamino)-3,4-diacetyloxyoxan-2-yl]methyl acetate
CAS 7494-99-7C21H27N5O11
4-Amino-1-[2-(carbamoylamino)-2-deoxyhexopyranosyl]pyrimidin-2(1H)-one--2,4,6-trinitrophenol (1/1) chemical structure, C17H20N8O13, CAS 7474-54-6
4-Amino-1-[2-(carbamoylamino)-2-deoxyhexopyranosyl]pyrimidin-2(1H)-one--2,4,6-trinitrophenol (1/1)
CAS 7474-54-6C17H20N8O13
[6-(4-Acetamido-2-oxopyrimidin-1-yl)-3,4-diacetyloxy-5-(dimethylamino)oxan-2-yl]methyl acetate chemical structure, C20H28N4O9, CAS 7702-55-8
[6-(4-Acetamido-2-oxopyrimidin-1-yl)-3,4-diacetyloxy-5-(dimethylamino)oxan-2-yl]methyl acetate
CAS 7702-55-8C20H28N4O9
[4,5-Diacetyloxy-6-(acetyloxymethyl)-2-(4-methoxy-2-oxopyrimidin-1-yl)oxan-3-yl] 2,2,2-trichloroacetate chemical structure, C19H21Cl3N2O11, CAS 7506-40-3
[4,5-Diacetyloxy-6-(acetyloxymethyl)-2-(4-methoxy-2-oxopyrimidin-1-yl)oxan-3-yl] 2,2,2-trichloroacetate
CAS 7506-40-3C19H21Cl3N2O11
[6-(4-Acetamido-2-oxopyrimidin-1-yl)-3,4,5-triacetyloxyoxan-2-yl]methyl acetate chemical structure, C20H25N3O11, CAS 3180-75-4
[6-(4-Acetamido-2-oxopyrimidin-1-yl)-3,4,5-triacetyloxyoxan-2-yl]methyl acetate
CAS 3180-75-4C20H25N3O11
[3,4,5-Triacetyloxy-6-(4-ethoxy-2-oxopyrimidin-1-yl)oxan-2-yl]methyl 2,2,2-trichloroacetate chemical structure, C20H23Cl3N2O11, CAS 4752-98-1
[3,4,5-Triacetyloxy-6-(4-ethoxy-2-oxopyrimidin-1-yl)oxan-2-yl]methyl 2,2,2-trichloroacetate
CAS 4752-98-1C20H23Cl3N2O11
[3,4,5-Triacetyloxy-6-(4-ethoxy-2-oxopyrimidin-1-yl)oxan-2-yl]methyl acetate chemical structure, C20H26N2O11, CAS 23707-29-1
[3,4,5-Triacetyloxy-6-(4-ethoxy-2-oxopyrimidin-1-yl)oxan-2-yl]methyl acetate
CAS 23707-29-1C20H26N2O11
2(1H)-Pyrimidinone, 4-amino-1-((2R,6S)-tetrahydro-6-(hydroxymethyl)-2H-pyran-2-yl)- chemical structure, C10H15N3O3, CAS 132198-21-1
2(1H)-Pyrimidinone, 4-amino-1-((2R,6S)-tetrahydro-6-(hydroxymethyl)-2H-pyran-2-yl)-
CAS 132198-21-1C10H15N3O3
2(1H)-Pyrimidinone, 4-amino-1-(2,3-dideoxy-b-D-erythro-hexopyranosyl)- chemical structure, C10H15N3O4, CAS 136020-18-3
2(1H)-Pyrimidinone, 4-amino-1-(2,3-dideoxy-b-D-erythro-hexopyranosyl)-
CAS 136020-18-3C10H15N3O4
Gougerotin chemical structure, C16H25N7O8, CAS 2096-42-6
Gougerotin
CAS 2096-42-6C16H25N7O8