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Murcko scaffold

2-(1H-Benzimidazol-2-ylmethyl)-1H-benzimidazole scaffold

14 chemicals on CompoundList share this ring system.

Rings
4
Scaffold atoms
19
Chemicals
14
With full pages
6
Scaffold SMILES

c1ccc2[nH]c(Cc3nc4ccccc4[nH]3)nc2c1

A Bemis-Murcko scaffold is what remains of a molecule when every side chain is removed: the rings and the chains that link them. Chemicals that share a scaffold often belong to the same compound series, which helps when you look for analogues, alternative suppliers or related building blocks.

Substructure search with this scaffoldOpen the 2-(1H-Benzimidazol-2-ylmethyl)-1H-benzimidazole page
Murcko scaffold c1ccc2[nH]c(Cc3nc4ccccc4[nH]3)nc2c1

Computed from the structures of the chemicals listed here. Stereo and charges are removed before the scaffold is taken.

Chemicals with this scaffold

Open one to see its structure, properties and suppliers.

Showing 1 to 14 of 14 chemicals

Bis(5-amidino-2-benzimidazolyl)methane chemical structure, C17H16N8, CAS 74733-75-8
Bis(5-amidino-2-benzimidazolyl)methane
CAS 74733-75-8C17H16N8
Bis(1-methylbenzimidazol-2-yl)methane chemical structure, C17H16N4, CAS 55514-10-8
Bis(1-methylbenzimidazol-2-yl)methane
CAS 55514-10-8C17H16N4
2-(1H-Benzimidazol-2-ylmethyl)-1H-benzimidazole chemical structure, C15H12N4, CAS 5999-14-4
2-(1H-Benzimidazol-2-ylmethyl)-1H-benzimidazole
CAS 5999-14-4C15H12N4
2,2'-Methylenebis(5,6-dimethylbenzimidazole) chemical structure, C19H20N4, CAS 3708-68-7
2,2'-Methylenebis(5,6-dimethylbenzimidazole)
CAS 3708-68-7C19H20N4
5-Methyl-2-[(6-methyl-1H-benzimidazol-2-yl)methyl]-1H-benzimidazole chemical structure, C17H16N4, CAS 55514-08-4
5-Methyl-2-[(6-methyl-1H-benzimidazol-2-yl)methyl]-1H-benzimidazole
CAS 55514-08-4C17H16N4
2-[(1H-1,3-Benzodiazol-2-yl)methyl]-1H-1,3-benzodiazol-7-amine chemical structure, C15H13N5, CAS 312772-80-8
2-[(1H-1,3-Benzodiazol-2-yl)methyl]-1H-1,3-benzodiazol-7-amine
CAS 312772-80-8C15H13N5
2,2'-Methylenebis(5,6-dichloro-1H-benzimidazole) chemical structure, C15H8Cl4N4, CAS 93912-66-4
2,2'-Methylenebis(5,6-dichloro-1H-benzimidazole)
CAS 93912-66-4C15H8Cl4N4
Chitinase chemical structure, C17H16N8Zn, CAS 9001-06-3
Chitinase
CAS 9001-06-3C17H16N8Zn
2,2'-Methylenedi(1H-benzimidazole-6-carbonitrile) chemical structure, C17H10N6, CAS 148344-29-0
2,2'-Methylenedi(1H-benzimidazole-6-carbonitrile)
CAS 148344-29-0C17H10N6
Benzimidazole,2'-methylenebis(5,6-dimethyl)-, dihydrochloride chemical structure, C19H21ClN4, CAS 3708-69-8
Benzimidazole,2'-methylenebis(5,6-dimethyl)-, dihydrochloride
CAS 3708-69-8C19H21ClN4
2,2'-Methylenebis(6-fluoro-1H-benzimidazole) chemical structure, C15H10F2N4, CAS 677032-52-9
2,2'-Methylenebis(6-fluoro-1H-benzimidazole)
CAS 677032-52-9C15H10F2N4
Apc-6336 chemical structure, C21H21N6O7P, CAS 263870-19-5
Apc-6336
CAS 263870-19-5C21H21N6O7P
2-[(1H-1,3-Benzodiazol-2-yl)methyl]-5-chloro-1H-1,3-benzodiazol-7-amine chemical structure, C15H12ClN5, CAS 2060063-83-2
2-[(1H-1,3-Benzodiazol-2-yl)methyl]-5-chloro-1H-1,3-benzodiazol-7-amine
CAS 2060063-83-2C15H12ClN5
2-[(1H-1,3-Benzodiazol-2-yl)methyl]-5-bromo-1H-1,3-benzodiazol-7-amine chemical structure, C15H12BrN5, CAS 2059987-36-7
2-[(1H-1,3-Benzodiazol-2-yl)methyl]-5-bromo-1H-1,3-benzodiazol-7-amine
CAS 2059987-36-7C15H12BrN5