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Murcko scaffold

Ring system with 5 rings and 26 atoms

12 chemicals on CompoundList share this ring system.

Rings
5
Scaffold atoms
26
Chemicals
12
With full pages
2
Scaffold SMILES

C(=C1Nc2ccccc2S1)c1cc[n+](-c2ccccc2)c2ccccc12

A Bemis-Murcko scaffold is what remains of a molecule when every side chain is removed: the rings and the chains that link them. Chemicals that share a scaffold often belong to the same compound series, which helps when you look for analogues, alternative suppliers or related building blocks.

Substructure search with this scaffold
Murcko scaffold C(=C1Nc2ccccc2S1)c1cc[n+](-c2ccccc2)c2ccccc12

Computed from the structures of the chemicals listed here. Stereo and charges are removed before the scaffold is taken.

Chemicals with this scaffold

Open one to see its structure, properties and suppliers.

Showing 1 to 12 of 12 chemicals

SYBR Green I chemical structure, C32H37N4S+, CAS 163795-75-3
SYBR Green I
CAS 163795-75-3C32H37N4S+
Pico green chemical structure, C34H42N5S+
Pico green
C34H42N5S+
2-{Bis[3-(dimethylamino)propyl]amino}-4-[(3-methyl-1,3-benzothiazol-2(3H)-ylidene)methyl]-1-phenylquinolinium chemical structure, C34H42N5S+, CAS 178918-98-4
2-{Bis[3-(dimethylamino)propyl]amino}-4-[(3-methyl-1,3-benzothiazol-2(3H)-ylidene)methyl]-1-phenylquinolinium
CAS 178918-98-4C34H42N5S+
(E)-2-((2-((3-(Dimethylamino)propyl)(propyl)amino)-1-phenylquinolin-4(1H)-ylidene)methyl)-3-methylbenzo[d]thiazol-3-ium chemical structure, C32H37N4S+
(E)-2-((2-((3-(Dimethylamino)propyl)(propyl)amino)-1-phenylquinolin-4(1H)-ylidene)methyl)-3-methylbenzo[d]thiazol-3-ium
C32H37N4S+
2-{[3-(Dimethylamino)propyl](propyl)amino}-4-[(3-methyl-1,3-benzothiazol-2(3H)-ylidene)methyl]-1-phenylquinolin-1-ium iodide chemical structure, C32H37IN4S, CAS 195199-04-3
2-{[3-(Dimethylamino)propyl](propyl)amino}-4-[(3-methyl-1,3-benzothiazol-2(3H)-ylidene)methyl]-1-phenylquinolin-1-ium iodide
CAS 195199-04-3C32H37IN4S
SYBR(R)Green I nucleic acid gel stain chemical structure, C32H37N4S+, CAS 178918-96-2
SYBR(R)Green I nucleic acid gel stain
CAS 178918-96-2C32H37N4S+
Picogreen chemical structure, C34H42N5S+, CAS 177571-06-1
Picogreen
CAS 177571-06-1C34H42N5S+
Nucleic Acid Dye Green I chemical structure, C32H37ClN4S
Nucleic Acid Dye Green I
C32H37ClN4S
N,N-Dimethyl-N'-[4-[(3-methyl-1,3-benzothiazol-2-ylidene)methyl]-1-phenylquinolin-1-ium-2-yl]-N'-propylpropane-1,3-diamine chloride chemical structure, C32H37ClN4S, CAS 2225748-05-8
N,N-Dimethyl-N'-[4-[(3-methyl-1,3-benzothiazol-2-ylidene)methyl]-1-phenylquinolin-1-ium-2-yl]-N'-propylpropane-1,3-diamine chloride
CAS 2225748-05-8C32H37ClN4S
(E)-2-((3-(Dimethylamino)propyl)(ethyl)amino)-4-((3-methylbenzo[d]thiazol-2(3H)-ylidene)methyl)-1-phenylquinolin-1-ium chemical structure, C31H35N4S+, CAS 1613296-48-2
(E)-2-((3-(Dimethylamino)propyl)(ethyl)amino)-4-((3-methylbenzo[d]thiazol-2(3H)-ylidene)methyl)-1-phenylquinolin-1-ium
CAS 1613296-48-2C31H35N4S+
(E)-2-((3-(Dimethylamino)propyl)(ethyl)amino)-4-((3-methylbenzo[d]thiazol-2(3H)-ylidene)methyl)-1-phenylquinolin-1-ium iodide chemical structure, C31H35IN4S, CAS 2225748-33-2
(E)-2-((3-(Dimethylamino)propyl)(ethyl)amino)-4-((3-methylbenzo[d]thiazol-2(3H)-ylidene)methyl)-1-phenylquinolin-1-ium iodide
CAS 2225748-33-2C31H35IN4S
SYBR green I (chloride) chemical structure, C32H37ClN4S
SYBR green I (chloride)
C32H37ClN4S