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Murcko scaffold

Ring system with 6 rings and 42 atoms

112 chemicals on CompoundList share this ring system.

Rings
6
Scaffold atoms
42
Chemicals
112
With full pages
6
Scaffold SMILES

O=C(Nc1ccn(C2CCC(COC(c3ccccc3)(c3ccccc3)c3ccccc3)O2)c(=O)n1)c1ccccc1

A Bemis-Murcko scaffold is what remains of a molecule when every side chain is removed: the rings and the chains that link them. Chemicals that share a scaffold often belong to the same compound series, which helps when you look for analogues, alternative suppliers or related building blocks.

Substructure search with this scaffold
Murcko scaffold O=C(Nc1ccn(C2CCC(COC(c3ccccc3)(c3ccccc3)c3ccccc3)O2)c(=O)n1)c1ccccc1

Computed from the structures of the chemicals listed here. Stereo and charges are removed before the scaffold is taken.

Chemicals with this scaffold

Open one to see its structure, properties and suppliers.

Showing 49 to 96 of 112 chemicals

Orb3237660 chemical structure, C52H65FN5O9PSi, CAS 1208977-44-9
Orb3237660
CAS 1208977-44-9C52H65FN5O9PSi
N4-Benzoyl-2'-deoxy-5'-O-(4,4'-dimethoxytrityl)-2',2'-difluorocytidine chemical structure, C37H33F2N3O7, CAS 142808-43-3
N4-Benzoyl-2'-deoxy-5'-O-(4,4'-dimethoxytrityl)-2',2'-difluorocytidine
CAS 142808-43-3C37H33F2N3O7
N4-Benzoyl-5'-O-(4,4'-dimethoxytrityl)-aracytidine chemical structure, C37H35N3O8, CAS 87418-76-6
N4-Benzoyl-5'-O-(4,4'-dimethoxytrityl)-aracytidine
CAS 87418-76-6C37H35N3O8
N4-Benzoyl-5'-O-DMT-2'-O-methyl-5-methylcytidine 3'-CE phosphoramidite chemical structure, C49H58N5O10P, CAS 251647-54-8
N4-Benzoyl-5'-O-DMT-2'-O-methyl-5-methylcytidine 3'-CE phosphoramidite
CAS 251647-54-8C49H58N5O10P
2'-Fluoro-2'-deoxy-ara-C-3'-phosphoramidite chemical structure, C46H51FN5O8P, CAS 1404463-12-2
2'-Fluoro-2'-deoxy-ara-C-3'-phosphoramidite
CAS 1404463-12-2C46H51FN5O8P
3'-TBDMS-Bz-rC Phosphoramidite chemical structure, C52H66N5O9PSi, CAS 129470-47-9
3'-TBDMS-Bz-rC Phosphoramidite
CAS 129470-47-9C52H66N5O9PSi
N4-benzoyl-5'-o-(4,4-dimethoxytrityl)-2'-deoxycytidine-3'-succinate, tea salt chemical structure, C47H54N4O10, CAS 402944-20-1
N4-benzoyl-5'-o-(4,4-dimethoxytrityl)-2'-deoxycytidine-3'-succinate, tea salt
CAS 402944-20-1C47H54N4O10
N4-Benzoyl-2'-deoxy-5'-O-DMT-2',2'-difluorocytidine 3'-CE phosphoramidite chemical structure, C46H50F2N5O8P, CAS 142808-44-4
N4-Benzoyl-2'-deoxy-5'-O-DMT-2',2'-difluorocytidine 3'-CE phosphoramidite
CAS 142808-44-4C46H50F2N5O8P
N-Benzoyl-5-((2-cyanoethoxy)methyl)-2'-deoxycytidine CEP chemical structure, C50H57N6O9P, CAS 188411-06-5
N-Benzoyl-5-((2-cyanoethoxy)methyl)-2'-deoxycytidine CEP
CAS 188411-06-5C50H57N6O9P
2-OTBS MeC(Bz) amidite chemical structure, C53H68N5O9PSi, CAS 160107-14-2
2-OTBS MeC(Bz) amidite
CAS 160107-14-2C53H68N5O9PSi
N4-Benzoyl-2'-deoxy-5'-O-DMT-2'-fluoro-5-methylcytidine chemical structure, C38H36FN3O7
N4-Benzoyl-2'-deoxy-5'-O-DMT-2'-fluoro-5-methylcytidine
C38H36FN3O7
5'-O-Trt-N4-Bz-rC chemical structure, C35H31N3O6, CAS 41092-41-5
5'-O-Trt-N4-Bz-rC
CAS 41092-41-5C35H31N3O6
Cytidine, N-benzoyl-5'-O-[bis(4-methoxyphenyl)phenylmethyl]-2'-deoxy-5-iodo-, 3'-[2-cyanoethyl bis(1-methylethyl)phosphoramidite] chemical structure, C46H51IN5O8P, CAS 178925-44-5
Cytidine, N-benzoyl-5'-O-[bis(4-methoxyphenyl)phenylmethyl]-2'-deoxy-5-iodo-, 3'-[2-cyanoethyl bis(1-methylethyl)phosphoramidite]
CAS 178925-44-5C46H51IN5O8P
3'-O-Me-C(Bz)-2'-phosphoramidite chemical structure, C47H54N5O9P, CAS 179479-03-9
3'-O-Me-C(Bz)-2'-phosphoramidite
CAS 179479-03-9C47H54N5O9P
3'-O-MOE-5Me-C(Bz)-2'-phosphoramidite chemical structure, C50H60N5O10P, CAS 1098233-10-3
3'-O-MOE-5Me-C(Bz)-2'-phosphoramidite
CAS 1098233-10-3C50H60N5O10P
2'-O-Acetyl-N4-benzoyl-5'-O-DMT arabinocytidine 3'-O-phosphoramidite chemical structure, C48H54N5O10P, CAS 675573-97-4
2'-O-Acetyl-N4-benzoyl-5'-O-DMT arabinocytidine 3'-O-phosphoramidite
CAS 675573-97-4C48H54N5O10P
N4-Benzoyl-5'-O-(4,4'-dimethoxytrityl)-3'-deoxy-3'-fluoro-beta-D-xylofuranosyl cytidine-2'-CED-phosphoramidite chemical structure, C46H51FN5O8P, CAS 1555759-30-2
N4-Benzoyl-5'-O-(4,4'-dimethoxytrityl)-3'-deoxy-3'-fluoro-beta-D-xylofuranosyl cytidine-2'-CED-phosphoramidite
CAS 1555759-30-2C46H51FN5O8P
DMT-dC(bz) Phosphoramidite-13C9,15N3 chemical structure, C46H52N5O8P, CAS 2483830-14-2
DMT-dC(bz) Phosphoramidite-13C9,15N3
CAS 2483830-14-2C46H52N5O8P
N-[1-[(2R,3S,4R,5R)-5-[[Bis(4-methoxyphenyl)-phenylmethoxy]methyl]-3-fluoro-4-hydroxyoxolan-2-yl]-5-methyl-2-oxopyrimidin-4-yl]benzamide chemical structure, C38H36FN3O7, CAS 2504147-11-7
N-[1-[(2R,3S,4R,5R)-5-[[Bis(4-methoxyphenyl)-phenylmethoxy]methyl]-3-fluoro-4-hydroxyoxolan-2-yl]-5-methyl-2-oxopyrimidin-4-yl]benzamide
CAS 2504147-11-7C38H36FN3O7
N4-Benzoyl-1-(2'-deoxy-5'-o-dmt-2'-fluoro-b-d-arabinofuranosyl)-5-methylcytosine-3'-o-succinate triethylammonium salt chemical structure, C48H55FN4O10, CAS 2504147-44-6
N4-Benzoyl-1-(2'-deoxy-5'-o-dmt-2'-fluoro-b-d-arabinofuranosyl)-5-methylcytosine-3'-o-succinate triethylammonium salt
CAS 2504147-44-6C48H55FN4O10
(2S,3R,5S)-5-(4-Benzamido-5-methyl-2-oxopyrimidin-1(2H)-yl)-2-((bis(4-methoxyphenyl)(phenyl)methoxy)methyl)tetrahydrofuran-3-yl (2-cyanoethyl) diisopropylphosphoramidite chemical structure, C47H54N5O8P, CAS 144256-04-2
(2S,3R,5S)-5-(4-Benzamido-5-methyl-2-oxopyrimidin-1(2H)-yl)-2-((bis(4-methoxyphenyl)(phenyl)methoxy)methyl)tetrahydrofuran-3-yl (2-cyanoethyl) diisopropylphosphoramidite
CAS 144256-04-2C47H54N5O8P
(2R,3R,4R,5R)-5-(4-Benzamido-2-oxopyrimidin-1(2H)-yl)-2-((bis(4-methoxyphenyl)(phenyl)methoxy)methyl)-4-propoxytetrahydrofuran-3-yl (2-cyanoethyl) (S)-diisopropylphosphoramidite chemical structure, C49H58N5O9P, CAS 160527-29-7
(2R,3R,4R,5R)-5-(4-Benzamido-2-oxopyrimidin-1(2H)-yl)-2-((bis(4-methoxyphenyl)(phenyl)methoxy)methyl)-4-propoxytetrahydrofuran-3-yl (2-cyanoethyl) (S)-diisopropylphosphoramidite
CAS 160527-29-7C49H58N5O9P
(2R,3R,4R,5R)-5-(4-Benzamido-2-oxopyrimidin-1(2H)-yl)-2-((bis(4-methoxyphenyl)(phenyl)methoxy)methyl)-4-methoxytetrahydrofuran-3-yl (2-cyanoethyl) (R)-diisopropylphosphoramidite chemical structure, C47H54N5O9P, CAS 145488-17-1
(2R,3R,4R,5R)-5-(4-Benzamido-2-oxopyrimidin-1(2H)-yl)-2-((bis(4-methoxyphenyl)(phenyl)methoxy)methyl)-4-methoxytetrahydrofuran-3-yl (2-cyanoethyl) (R)-diisopropylphosphoramidite
CAS 145488-17-1C47H54N5O9P
N-[1-[(2R,4S,5R)-5-[[bis(4-methoxyphenyl)-phenylmethoxy](113C)methyl]-4-[2-cyanoethoxy-[di(propan-2-yl)amino]phosphanyl]oxy(2,3,4,5-13C4)oxolan-2-yl]-2-oxo(2,4,5,6-13C4,1,3-15N2)pyrimidin-4-yl]benzamide chemical structure, C46H52N5O8P
N-[1-[(2R,4S,5R)-5-[[bis(4-methoxyphenyl)-phenylmethoxy](113C)methyl]-4-[2-cyanoethoxy-[di(propan-2-yl)amino]phosphanyl]oxy(2,3,4,5-13C4)oxolan-2-yl]-2-oxo(2,4,5,6-13C4,1,3-15N2)pyrimidin-4-yl]benzamide
C46H52N5O8P