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Murcko scaffold

2-(((1H-Benzo[d]imidazol-2-yl)thio)methyl)imidazo[1,2-a]pyrimidine scaffold

10 chemicals on CompoundList share this ring system.

Rings
4
Scaffold atoms
20
Chemicals
10
With full pages
4
Scaffold SMILES

c1ccc2[nH]c(SCc3cn4cccnc4n3)nc2c1

A Bemis-Murcko scaffold is what remains of a molecule when every side chain is removed: the rings and the chains that link them. Chemicals that share a scaffold often belong to the same compound series, which helps when you look for analogues, alternative suppliers or related building blocks.

Substructure search with this scaffoldOpen the 2-(((1H-Benzo[d]imidazol-2-yl)thio)methyl)imidazo[1,2-a]pyrimidine page
Murcko scaffold c1ccc2[nH]c(SCc3cn4cccnc4n3)nc2c1

Computed from the structures of the chemicals listed here. Stereo and charges are removed before the scaffold is taken.

Chemicals with this scaffold

Open one to see its structure, properties and suppliers.

Showing 1 to 10 of 10 chemicals

2-(((5-Nitro-1H-benzo[d]imidazol-2-yl)thio)methyl)imidazo[1,2-a]pyrimidine chemical structure, C14H10N6O2S, CAS 307337-61-7
2-(((5-Nitro-1H-benzo[d]imidazol-2-yl)thio)methyl)imidazo[1,2-a]pyrimidine
CAS 307337-61-7C14H10N6O2S
2-(((6-Methyl-1H-benzo[d]imidazol-2-yl)thio)methyl)imidazo[1,2-a]pyrimidine chemical structure, C15H13N5S, CAS 370586-66-6
2-(((6-Methyl-1H-benzo[d]imidazol-2-yl)thio)methyl)imidazo[1,2-a]pyrimidine
CAS 370586-66-6C15H13N5S
2-(((1H-Benzo[d]imidazol-2-yl)thio)methyl)-5,7-dimethylimidazo[1,2-a]pyrimidine chemical structure, C16H15N5S, CAS 314746-74-2
2-(((1H-Benzo[d]imidazol-2-yl)thio)methyl)-5,7-dimethylimidazo[1,2-a]pyrimidine
CAS 314746-74-2C16H15N5S
2-(((1H-Benzo[d]imidazol-2-yl)thio)methyl)imidazo[1,2-a]pyrimidine chemical structure, C14H11N5S, CAS 302584-01-6
2-(((1H-Benzo[d]imidazol-2-yl)thio)methyl)imidazo[1,2-a]pyrimidine
CAS 302584-01-6C14H11N5S
2-(((1H-Benzo[d]imidazol-2-yl)thio)methyl)-3-bromoimidazo[1,2-a]pyrimidine chemical structure, C14H10BrN5S, CAS 307545-98-8
2-(((1H-Benzo[d]imidazol-2-yl)thio)methyl)-3-bromoimidazo[1,2-a]pyrimidine
CAS 307545-98-8C14H10BrN5S
3-Bromo-2-(((5-nitro-1H-benzo[d]imidazol-2-yl)thio)methyl)imidazo[1,2-a]pyrimidine chemical structure, C14H9BrN6O2S, CAS 328017-19-2
3-Bromo-2-(((5-nitro-1H-benzo[d]imidazol-2-yl)thio)methyl)imidazo[1,2-a]pyrimidine
CAS 328017-19-2C14H9BrN6O2S
3-Bromo-5,7-dimethyl-2-(((5-nitro-1H-benzo[d]imidazol-2-yl)thio)methyl)imidazo[1,2-a]pyrimidine chemical structure, C16H13BrN6O2S, CAS 328017-20-5
3-Bromo-5,7-dimethyl-2-(((5-nitro-1H-benzo[d]imidazol-2-yl)thio)methyl)imidazo[1,2-a]pyrimidine
CAS 328017-20-5C16H13BrN6O2S
3-Chloro-2-(((6-ethoxy-1H-benzo[d]imidazol-2-yl)thio)methyl)imidazo[1,2-a]pyrimidine chemical structure, C16H14ClN5OS, CAS 325731-43-9
3-Chloro-2-(((6-ethoxy-1H-benzo[d]imidazol-2-yl)thio)methyl)imidazo[1,2-a]pyrimidine
CAS 325731-43-9C16H14ClN5OS
5,7-Dimethyl-2-(((5-nitro-1H-benzo[d]imidazol-2-yl)thio)methyl)imidazo[1,2-a]pyrimidine chemical structure, C16H14N6O2S, CAS 328017-28-3
5,7-Dimethyl-2-(((5-nitro-1H-benzo[d]imidazol-2-yl)thio)methyl)imidazo[1,2-a]pyrimidine
CAS 328017-28-3C16H14N6O2S
2-(((1H-Benzo[d]imidazol-2-yl)thio)methyl)imidazo[1,2-a]pyrimidine hydrobromide chemical structure, C14H12BrN5S, CAS 1216387-61-9
2-(((1H-Benzo[d]imidazol-2-yl)thio)methyl)imidazo[1,2-a]pyrimidine hydrobromide
CAS 1216387-61-9C14H12BrN5S