CompoundList
Sign in
Murcko scaffold

Ring system with 2 rings and 12 atoms

69 chemicals on CompoundList share this ring system.

Rings
2
Scaffold atoms
12
Chemicals
69
With full pages
16
Scaffold SMILES

O=c1ncccn1C1CSCO1

A Bemis-Murcko scaffold is what remains of a molecule when every side chain is removed: the rings and the chains that link them. Chemicals that share a scaffold often belong to the same compound series, which helps when you look for analogues, alternative suppliers or related building blocks.

Substructure search with this scaffold
Murcko scaffold O=c1ncccn1C1CSCO1

Computed from the structures of the chemicals listed here. Stereo and charges are removed before the scaffold is taken.

Chemicals with this scaffold

Open one to see its structure, properties and suppliers.

Showing 1 to 48 of 69 chemicals

RefChem:357360 chemical structure, C8H11N3O3S, CAS 141434-39-1
RefChem:357360
CAS 141434-39-1C8H11N3O3S
Lamivudine chemical structure, C8H11N3O3S, CAS 134678-17-4
Lamivudine
CAS 134678-17-4C8H11N3O3S
Emtricitabine chemical structure, C8H10FN3O3S, CAS 143491-57-0
Emtricitabine
CAS 143491-57-0C8H10FN3O3S
5-Bromo-1-(2-(hydroxymethyl)-1,3-oxathiolan-5-yl)cytosine chemical structure, C8H10BrN3O3S, CAS 137530-43-9
5-Bromo-1-(2-(hydroxymethyl)-1,3-oxathiolan-5-yl)cytosine
CAS 137530-43-9C8H10BrN3O3S
2',3'-Dideoxy-3'-thiacytidine chemical structure, C8H11N3O3S, CAS 134680-32-3
2',3'-Dideoxy-3'-thiacytidine
CAS 134680-32-3C8H11N3O3S
2(1H)-Pyrimidinone, 4-amino-1-(2-(hydroxymethyl)-1,3-oxathiolan-5-yl)-, (2R-trans)- chemical structure, C8H11N3O3S, CAS 139757-68-9
2(1H)-Pyrimidinone, 4-amino-1-(2-(hydroxymethyl)-1,3-oxathiolan-5-yl)-, (2R-trans)-
CAS 139757-68-9C8H11N3O3S
Lamivudine triphosphate chemical structure, C8H14N3O12P3S, CAS 143188-53-8
Lamivudine triphosphate
CAS 143188-53-8C8H14N3O12P3S
2(1H)-Pyrimidinone, 4-amino-1-(2-(hydroxymethyl)-1,3-oxathiolan-5-yl)-5-methyl-, (2R-cis)- chemical structure, C9H13N3O3S, CAS 145986-24-9
2(1H)-Pyrimidinone, 4-amino-1-(2-(hydroxymethyl)-1,3-oxathiolan-5-yl)-5-methyl-, (2R-cis)-
CAS 145986-24-9C9H13N3O3S
2(1H)-Pyrimidinone, 4-amino-1-(2-(hydroxymethyl)-1,3-oxathiolan-5-yl)-5-methyl-, (2R-trans)- chemical structure, C9H13N3O3S, CAS 145986-25-0
2(1H)-Pyrimidinone, 4-amino-1-(2-(hydroxymethyl)-1,3-oxathiolan-5-yl)-5-methyl-, (2R-trans)-
CAS 145986-25-0C9H13N3O3S
alpha-L-(+)-(2R,5R)-5-Fluoro-1-(2-(hydroxymethyl)-1,3-oxathiolan-5-yl)cytosine chemical structure, C8H10FN3O3S, CAS 145986-26-1
alpha-L-(+)-(2R,5R)-5-Fluoro-1-(2-(hydroxymethyl)-1,3-oxathiolan-5-yl)cytosine
CAS 145986-26-1C8H10FN3O3S
2(1H)-Pyrimidinone, 4-amino-5-chloro-1-[2-(hydroxymethyl)-1,3-oxathiolan-5-yl]-, (2R-cis)- chemical structure, C8H10ClN3O3S, CAS 145986-27-2
2(1H)-Pyrimidinone, 4-amino-5-chloro-1-[2-(hydroxymethyl)-1,3-oxathiolan-5-yl]-, (2R-cis)-
CAS 145986-27-2C8H10ClN3O3S
2(1H)-Pyrimidinone, 4-amino-5-chloro-1-(2-(hydroxymethyl)-1,3-oxathiolan-5-yl)-, (2R-trans)- chemical structure, C8H10ClN3O3S, CAS 145986-28-3
2(1H)-Pyrimidinone, 4-amino-5-chloro-1-(2-(hydroxymethyl)-1,3-oxathiolan-5-yl)-, (2R-trans)-
CAS 145986-28-3C8H10ClN3O3S
2(1H)-Pyrimidinone, 4-amino-5-bromo-1-(2-(hydroxymethyl)-1,3-oxathiolan-5-yl)-, (2R-cis)- chemical structure, C8H10BrN3O3S, CAS 145986-29-4
2(1H)-Pyrimidinone, 4-amino-5-bromo-1-(2-(hydroxymethyl)-1,3-oxathiolan-5-yl)-, (2R-cis)-
CAS 145986-29-4C8H10BrN3O3S
2(1H)-Pyrimidinone, 4-amino-5-bromo-1-(2-(hydroxymethyl)-1,3-oxathiolan-5-yl)-, (2R-trans)- chemical structure, C8H10BrN3O3S, CAS 145986-30-7
2(1H)-Pyrimidinone, 4-amino-5-bromo-1-(2-(hydroxymethyl)-1,3-oxathiolan-5-yl)-, (2R-trans)-
CAS 145986-30-7C8H10BrN3O3S
2(1H)-Pyrimidinone, 4-amino-1-(2-(hydroxymethyl)-1,3-oxathiolan-5-yl)-5-iodo-, (2R-cis)- chemical structure, C8H10IN3O3S, CAS 145986-31-8
2(1H)-Pyrimidinone, 4-amino-1-(2-(hydroxymethyl)-1,3-oxathiolan-5-yl)-5-iodo-, (2R-cis)-
CAS 145986-31-8C8H10IN3O3S
2(1H)-Pyrimidinone, 4-amino-1-(2-(hydroxymethyl)-1,3-oxathiolan-5-yl)-5-iodo-, (2R-trans)- chemical structure, C8H10IN3O3S, CAS 145986-32-9
2(1H)-Pyrimidinone, 4-amino-1-(2-(hydroxymethyl)-1,3-oxathiolan-5-yl)-5-iodo-, (2R-trans)-
CAS 145986-32-9C8H10IN3O3S
(+)-2'-Deoxy-3'-thia-5-fluorocytidine chemical structure, C8H10FN3O3S, CAS 137530-41-7
(+)-2'-Deoxy-3'-thia-5-fluorocytidine
CAS 137530-41-7C8H10FN3O3S
2(1H)-Pyrimidinone, 4-amino-1-(2-(hydroxymethyl)-1,3-oxathiolan-5-yl)-5-methyl-, (2S-cis)- chemical structure, C9H13N3O3S, CAS 137623-41-7
2(1H)-Pyrimidinone, 4-amino-1-(2-(hydroxymethyl)-1,3-oxathiolan-5-yl)-5-methyl-, (2S-cis)-
CAS 137623-41-7C9H13N3O3S
2(1H)-Pyrimidinone, 4-amino-5-chloro-1-(2-(hydroxymethyl)-1,3-oxathiolan-5-yl)-, (2S-cis)- chemical structure, C8H10ClN3O3S, CAS 137530-42-8
2(1H)-Pyrimidinone, 4-amino-5-chloro-1-(2-(hydroxymethyl)-1,3-oxathiolan-5-yl)-, (2S-cis)-
CAS 137530-42-8C8H10ClN3O3S
2(1H)-Pyrimidinone, 4-amino-1-(2-(hydroxymethyl)-1,3-oxathiolan-5-yl)-5-iodo-, (2S-cis)- chemical structure, C8H10IN3O3S, CAS 137530-44-0
2(1H)-Pyrimidinone, 4-amino-1-(2-(hydroxymethyl)-1,3-oxathiolan-5-yl)-5-iodo-, (2S-cis)-
CAS 137530-44-0C8H10IN3O3S
((2S,5R)-5-(4-Amino-5-fluoro-2-oxopyrimidin-1(2H)-yl)-1,3-oxathiolan-2-yl)methyl butyrate chemical structure, C12H16FN3O4S, CAS 143491-58-1
((2S,5R)-5-(4-Amino-5-fluoro-2-oxopyrimidin-1(2H)-yl)-1,3-oxathiolan-2-yl)methyl butyrate
CAS 143491-58-1C12H16FN3O4S
[[(2r,5s)-5-(4-Azanyl-5-Fluoranyl-2-Oxidanylidene-Pyrimidin-1-Yl)-1,3-Oxathiolan-2-Yl]methoxy-Oxidanyl-Phosphoryl] Phosphono Hydrogen Phosphate chemical structure, C8H13FN3O12P3S, CAS 145819-92-7
[[(2r,5s)-5-(4-Azanyl-5-Fluoranyl-2-Oxidanylidene-Pyrimidin-1-Yl)-1,3-Oxathiolan-2-Yl]methoxy-Oxidanyl-Phosphoryl] Phosphono Hydrogen Phosphate
CAS 145819-92-7C8H13FN3O12P3S
[(2r,5s)-5-(4-Amino-5-Fluoro-2-Oxopyrimidin-1(2H)-Yl)-1,3-Oxathiolan-2-Yl]methyl Dihydrogen Phosphate chemical structure, C8H11FN3O6PS, CAS 156198-94-6
[(2r,5s)-5-(4-Amino-5-Fluoro-2-Oxopyrimidin-1(2H)-Yl)-1,3-Oxathiolan-2-Yl]methyl Dihydrogen Phosphate
CAS 156198-94-6C8H11FN3O6PS
Lamivudine, (A+-)-trans- chemical structure, C8H11N3O3S, CAS 131086-22-1
Lamivudine, (A+-)-trans-
CAS 131086-22-1C8H11N3O3S