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Murcko scaffold

9-Cyclopentyl-3,9-dihydro-6H-purin-6-one scaffold

34 chemicals on CompoundList share this ring system.

Rings
3
Scaffold atoms
15
Chemicals
34
With full pages
4
Scaffold SMILES

O=c1[nH]cnc2c1ncn2C1CCCC1

A Bemis-Murcko scaffold is what remains of a molecule when every side chain is removed: the rings and the chains that link them. Chemicals that share a scaffold often belong to the same compound series, which helps when you look for analogues, alternative suppliers or related building blocks.

Substructure search with this scaffoldOpen the 9-Cyclopentyl-3,9-dihydro-6H-purin-6-one page
Murcko scaffold O=c1[nH]cnc2c1ncn2C1CCCC1

Computed from the structures of the chemicals listed here. Stereo and charges are removed before the scaffold is taken.

Chemicals with this scaffold

Open one to see its structure, properties and suppliers.

Showing 1 to 34 of 34 chemicals

2-Amino-9-cyclopentyl-1H-purin-6-one chemical structure, C10H13N5O, CAS 94489-24-4
2-Amino-9-cyclopentyl-1H-purin-6-one
CAS 94489-24-4C10H13N5O
Guanine, 9-(2,3-dihydroxy-4-(hydroxymethyl)cyclopentyl)- chemical structure, C11H15N5O4
Guanine, 9-(2,3-dihydroxy-4-(hydroxymethyl)cyclopentyl)-
C11H15N5O4
9-Cyclopentyl-3,9-dihydro-6H-purin-6-one chemical structure, C10H12N4O, CAS 5444-82-6
9-Cyclopentyl-3,9-dihydro-6H-purin-6-one
CAS 5444-82-6C10H12N4O
2-Amino-9-[3-(hydroxymethyl)cyclopentyl]-1H-purin-6-one chemical structure, C11H15N5O2
2-Amino-9-[3-(hydroxymethyl)cyclopentyl]-1H-purin-6-one
C11H15N5O2
2-Amino-9-[3-hydroxy-4-(hydroxymethyl)cyclopentyl]-1H-purin-6-one chemical structure, C11H15N5O3
2-Amino-9-[3-hydroxy-4-(hydroxymethyl)cyclopentyl]-1H-purin-6-one
C11H15N5O3
2-Amino-9-[2,3-dihydroxy-4-(hydroxymethyl)cyclopentyl]-3H-purin-6-one chemical structure, C11H15N5O4, CAS 50619-40-4
2-Amino-9-[2,3-dihydroxy-4-(hydroxymethyl)cyclopentyl]-3H-purin-6-one
CAS 50619-40-4C11H15N5O4
Carbocyclic 5'-nor-2'-deoxyguanosine chemical structure, C10H13N5O3, CAS 140438-62-6
Carbocyclic 5'-nor-2'-deoxyguanosine
CAS 140438-62-6C10H13N5O3
2-Amino-9-[(1R,3S,4R)-3-hydroxy-4-(hydroxymethyl)cyclopentyl]-1H-purin-6-one chemical structure, C11H15N5O3, CAS 91296-12-7
2-Amino-9-[(1R,3S,4R)-3-hydroxy-4-(hydroxymethyl)cyclopentyl]-1H-purin-6-one
CAS 91296-12-7C11H15N5O3
Triphosphoricacid,P-[[(1R,2S,4R)-4-(2-amino-1,6-dihydro-6-oxo-9H-purin-9-yl)-2-hydroxycyclopentyl]methyl]ester chemical structure, C11H18N5O12P3, CAS 118905-02-5
Triphosphoricacid,P-[[(1R,2S,4R)-4-(2-amino-1,6-dihydro-6-oxo-9H-purin-9-yl)-2-hydroxycyclopentyl]methyl]ester
CAS 118905-02-5C11H18N5O12P3
HSV-TK substrate chemical structure, C11H15N5O4, CAS 111687-37-7
HSV-TK substrate
CAS 111687-37-7C11H15N5O4
9-((1S,2R)-2-Hydroxycyclopentyl)-3H-purin-6(9H)-one chemical structure, C10H12N4O2, CAS 6277-54-9
9-((1S,2R)-2-Hydroxycyclopentyl)-3H-purin-6(9H)-one
CAS 6277-54-9C10H12N4O2
Hypoxanthine, 9-(cis-3-(hydroxymethyl)cyclopentyl)- chemical structure, C11H14N4O2, CAS 120330-37-2
Hypoxanthine, 9-(cis-3-(hydroxymethyl)cyclopentyl)-
CAS 120330-37-2C11H14N4O2
Carbocyclic-xyloguanosine chemical structure, C11H15N5O4, CAS 108742-09-2
Carbocyclic-xyloguanosine
CAS 108742-09-2C11H15N5O4
Carbocyclic-2',3'-dideoxyguanosine chemical structure, C11H15N5O2, CAS 112915-00-1
Carbocyclic-2',3'-dideoxyguanosine
CAS 112915-00-1C11H15N5O2
6H-Purin-6-one, 2-amino-9-(2-fluoro-3-(hydroxymethyl)cyclopentyl)-1,9-dihydro-, (1alpha,2alpha,3alpha)- chemical structure, C11H14FN5O2, CAS 129746-13-0
6H-Purin-6-one, 2-amino-9-(2-fluoro-3-(hydroxymethyl)cyclopentyl)-1,9-dihydro-, (1alpha,2alpha,3alpha)-
CAS 129746-13-0C11H14FN5O2
2-Amino-9-[(1S,2S,3S)-2-fluoro-3-(hydroxymethyl)cyclopentyl]-1H-purin-6-one chemical structure, C11H14FN5O2, CAS 129829-89-6
2-Amino-9-[(1S,2S,3S)-2-fluoro-3-(hydroxymethyl)cyclopentyl]-1H-purin-6-one
CAS 129829-89-6C11H14FN5O2
2-Amino-1,9-dihydro-9-(2,3-dihydroxy-4-(hydroxymethyl)cyclopentyl)-6H-purin-6-one chemical structure, C11H15N5O4, CAS 125073-26-9
2-Amino-1,9-dihydro-9-(2,3-dihydroxy-4-(hydroxymethyl)cyclopentyl)-6H-purin-6-one
CAS 125073-26-9C11H15N5O4
Carbocyclic 2'-deoxyguanosine 5'-triphosphate chemical structure, C11H16N5O6P, CAS 118905-01-4
Carbocyclic 2'-deoxyguanosine 5'-triphosphate
CAS 118905-01-4C11H16N5O6P
Carbocyclic guanosine monophosphate chemical structure, C11H16N5O7P, CAS 97727-47-4
Carbocyclic guanosine monophosphate
CAS 97727-47-4C11H16N5O7P
Carbocyclic inosine monophosphate chemical structure, C11H15N4O7P, CAS 97727-48-5
Carbocyclic inosine monophosphate
CAS 97727-48-5C11H15N4O7P
Carbocyclic 2'-deoxyguanosine chemical structure, C11H15N5O3, CAS 106863-55-2
Carbocyclic 2'-deoxyguanosine
CAS 106863-55-2C11H15N5O3
Aristeromycin M chemical structure, C11H14N4O3, CAS 98873-79-1
Aristeromycin M
CAS 98873-79-1C11H14N4O3
Carbocyclic inosine chemical structure, C11H14N4O4, CAS 16975-94-3
Carbocyclic inosine
CAS 16975-94-3C11H14N4O4
2-Amino-1,9-dihydro-9-(2-fluoro-4-hydroxy-3-(hydroxymethyl)cyclopentyl)-6H-purin-6-one chemical structure, C11H14FN5O3, CAS 131043-40-8
2-Amino-1,9-dihydro-9-(2-fluoro-4-hydroxy-3-(hydroxymethyl)cyclopentyl)-6H-purin-6-one
CAS 131043-40-8C11H14FN5O3