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Murcko scaffold

Ring system with 5 rings and 34 atoms

387 chemicals on CompoundList share this ring system.

Rings
5
Scaffold atoms
34
Chemicals
387
With full pages
18
Scaffold SMILES

O=c1ccn(C2CCC(COC(c3ccccc3)(c3ccccc3)c3ccccc3)O2)c(=O)[nH]1

A Bemis-Murcko scaffold is what remains of a molecule when every side chain is removed: the rings and the chains that link them. Chemicals that share a scaffold often belong to the same compound series, which helps when you look for analogues, alternative suppliers or related building blocks.

Substructure search with this scaffold
Murcko scaffold O=c1ccn(C2CCC(COC(c3ccccc3)(c3ccccc3)c3ccccc3)O2)c(=O)[nH]1

Computed from the structures of the chemicals listed here. Stereo and charges are removed before the scaffold is taken.

Chemicals with this scaffold

Open one to see its structure, properties and suppliers.

Showing 1 to 48 of 387 chemicals

5'-O-(Bis(4-methoxyphenyl)benzyl)-2'-deoxyuridine chemical structure, C30H30N2O7, CAS 23669-79-6
5'-O-(Bis(4-methoxyphenyl)benzyl)-2'-deoxyuridine
CAS 23669-79-6C30H30N2O7
5'-O-Trityluridine chemical structure, C28H26N2O6, CAS 6554-10-5
5'-O-Trityluridine
CAS 6554-10-5C28H26N2O6
5'-O-(4,4'-Dimethoxytrityl)thymidine chemical structure, C31H32N2O7, CAS 40615-39-2
5'-O-(4,4'-Dimethoxytrityl)thymidine
CAS 40615-39-2C31H32N2O7
1-(3-o-Acetyl-2-deoxy-5-o-tritylpentofuranosyl)-5-methylpyrimidine-2,4(1H,3H)-dione chemical structure, C31H30N2O6, CAS 23583-46-2
1-(3-o-Acetyl-2-deoxy-5-o-tritylpentofuranosyl)-5-methylpyrimidine-2,4(1H,3H)-dione
CAS 23583-46-2C31H30N2O6
5-Fluoro-1-[4-hydroxy-5-(trityloxymethyl)oxolan-2-yl]pyrimidine-2,4-dione chemical structure, C28H25FN2O5, CAS 10343-71-2
5-Fluoro-1-[4-hydroxy-5-(trityloxymethyl)oxolan-2-yl]pyrimidine-2,4-dione
CAS 10343-71-2C28H25FN2O5
5'-O-Trityl-3'-O-mesylthymidine chemical structure, C30H30N2O7S
5'-O-Trityl-3'-O-mesylthymidine
C30H30N2O7S
1-[4-Hydroxy-5-(trityloxymethyl)oxolan-2-yl]pyrimidine-2,4-dione chemical structure, C28H26N2O5, CAS 84472-83-3
1-[4-Hydroxy-5-(trityloxymethyl)oxolan-2-yl]pyrimidine-2,4-dione
CAS 84472-83-3C28H26N2O5
[5-(2,4-Dioxopyrimidin-1-yl)-2-(trityloxymethyl)oxolan-3-yl] methanesulfonate chemical structure, C29H28N2O7S, CAS 5983-03-9
[5-(2,4-Dioxopyrimidin-1-yl)-2-(trityloxymethyl)oxolan-3-yl] methanesulfonate
CAS 5983-03-9C29H28N2O7S
Uridine, 2'-(butylamino)-2',3'-dideoxy-5'-O-((4-methoxyphenyl)diphenylmethyl)-5-methyl- chemical structure, C34H39N3O5, CAS 134935-03-8
Uridine, 2'-(butylamino)-2',3'-dideoxy-5'-O-((4-methoxyphenyl)diphenylmethyl)-5-methyl-
CAS 134935-03-8C34H39N3O5
1-(2,3-Di-O-mesyl-5-O-trityl-beta-D-ribofuranosyl)thymine chemical structure, C31H32N2O10S2, CAS 124493-84-1
1-(2,3-Di-O-mesyl-5-O-trityl-beta-D-ribofuranosyl)thymine
CAS 124493-84-1C31H32N2O10S2
Uridine, 2',3'-dideoxy-2',3'-difluoro-5-methyl-5'-O-(triphenylmethyl)- chemical structure, C29H26F2N2O4, CAS 132776-17-1
Uridine, 2',3'-dideoxy-2',3'-difluoro-5-methyl-5'-O-(triphenylmethyl)-
CAS 132776-17-1C29H26F2N2O4
1-(2-Deoxy-2-fluoro-3-O-mesyl-5-O-trityl-beta-D-arabinofuranosyl)thymine chemical structure, C30H29FN2O7S, CAS 128114-98-7
1-(2-Deoxy-2-fluoro-3-O-mesyl-5-O-trityl-beta-D-arabinofuranosyl)thymine
CAS 128114-98-7C30H29FN2O7S
1-(3-Azido-3-deoxy-5-O-trityl-beta-D-arabinofuranosyl)thymine chemical structure, C29H27N5O5, CAS 128269-50-1
1-(3-Azido-3-deoxy-5-O-trityl-beta-D-arabinofuranosyl)thymine
CAS 128269-50-1C29H27N5O5
1-(2-Azido-2-deoxy-5-O-trityl-beta-D-xylofuranosyl)thymine chemical structure, C29H27N5O5, CAS 132776-24-0
1-(2-Azido-2-deoxy-5-O-trityl-beta-D-xylofuranosyl)thymine
CAS 132776-24-0C29H27N5O5
AZddF-ribofuranosyl-T chemical structure, C29H26FN5O4, CAS 132776-25-1
AZddF-ribofuranosyl-T
CAS 132776-25-1C29H26FN5O4
AZddF-trityl-methyl-U chemical structure, C29H26FN5O4, CAS 132776-26-2
AZddF-trityl-methyl-U
CAS 132776-26-2C29H26FN5O4
1-(3-Deoxy-5-O-trityl-beta-D-threo-pentofuranosyl)thymine chemical structure, C29H28N2O5, CAS 122857-57-2
1-(3-Deoxy-5-O-trityl-beta-D-threo-pentofuranosyl)thymine
CAS 122857-57-2C29H28N2O5
1-(2,3-Dideoxy-2-fluoro-5-O-trityl-beta-D-erythro-pentofuranosyl)thymine chemical structure, C29H27FN2O4, CAS 132776-30-8
1-(2,3-Dideoxy-2-fluoro-5-O-trityl-beta-D-erythro-pentofuranosyl)thymine
CAS 132776-30-8C29H27FN2O4
5-(2-Bromoethenyl)-1-[(2R,4S,5R)-4-hydroxy-5-(trityloxymethyl)oxolan-2-yl]pyrimidine-2,4-dione chemical structure, C30H27BrN2O5
5-(2-Bromoethenyl)-1-[(2R,4S,5R)-4-hydroxy-5-(trityloxymethyl)oxolan-2-yl]pyrimidine-2,4-dione
C30H27BrN2O5
1-(2-Deoxy-5-O-(triphenylmethyl)pentofuranosyl)-5-methylpyrimidine-2,4(1H,3H)-dione chemical structure, C29H28N2O5, CAS 7791-71-1
1-(2-Deoxy-5-O-(triphenylmethyl)pentofuranosyl)-5-methylpyrimidine-2,4(1H,3H)-dione
CAS 7791-71-1C29H28N2O5
1-[4-Azido-5-(trityloxymethyl)oxolan-2-yl]pyrimidine-2,4-dione chemical structure, C28H25N5O4
1-[4-Azido-5-(trityloxymethyl)oxolan-2-yl]pyrimidine-2,4-dione
C28H25N5O4
5-[(E)-2-Bromovinyl]-1-[(2R,4S,5R)-4-hydroxy-5-(trityloxymethyl)tetrahydrofuran-2-yl]pyrimidine-2,4-dione chemical structure, C30H27BrN2O5, CAS 84422-56-0
5-[(E)-2-Bromovinyl]-1-[(2R,4S,5R)-4-hydroxy-5-(trityloxymethyl)tetrahydrofuran-2-yl]pyrimidine-2,4-dione
CAS 84422-56-0C30H27BrN2O5
5'-O-(Bis(4-methoxyphenyl)(phenyl)methyl)-2'-deoxy-2'-fluorouridine chemical structure, C30H29FN2O7, CAS 146954-74-7
5'-O-(Bis(4-methoxyphenyl)(phenyl)methyl)-2'-deoxy-2'-fluorouridine
CAS 146954-74-7C30H29FN2O7
RefChem:382213 chemical structure, C30H31N3O7, CAS 174221-86-4
RefChem:382213
CAS 174221-86-4C30H31N3O7