Murcko scaffold
2-Mercaptobenzimidazole scaffold
244 chemicals on CompoundList share this ring system.
- Rings
- 2
- Scaffold atoms
- 10
- Chemicals
- 244
- With full pages
- 45
Scaffold SMILES
S=c1[nH]c2ccccc2[nH]1
A Bemis-Murcko scaffold is what remains of a molecule when every side chain is removed: the rings and the chains that link them. Chemicals that share a scaffold often belong to the same compound series, which helps when you look for analogues, alternative suppliers or related building blocks.
![Murcko scaffold S=c1[nH]c2ccccc2[nH]1](/scaffold/YHMYGUUIMTVXNW-UHFFFAOYSA-N/structure.svg)
Computed from the structures of the chemicals listed here. Stereo and charges are removed before the scaffold is taken.
Chemicals with this scaffold
Open one to see its structure, properties and suppliers.
Showing 1 to 48 of 244 chemicals
1,3-Dimethylbenzimidazoline-2-thione
CAS 3418-46-0C9H10N2S
5-Methoxy-2-mercaptobenzimidazole
CAS 37052-78-1C8H8N2OS
![3-[3-(2-Carboxyethyl)-2-sulfanylidene-2,3-dihydro-1H-1,3-benzodiazol-1-yl]propanoic acid chemical structure, C13H14N2O4S, CAS 67427-11-6](/s/MZZWYKPKOLXPHO-UHFFFAOYSA-N.svg)
3-[3-(2-Carboxyethyl)-2-sulfanylidene-2,3-dihydro-1H-1,3-benzodiazol-1-yl]propanoic acid
CAS 67427-11-6C13H14N2O4S
![6,7-Dimethyl-1H-benzo[D]imidazole-2-thiol chemical structure, C9H10N2S, CAS 116643-17-5](/s/PZCZKNDMOKQRTR-UHFFFAOYSA-N.svg)
6,7-Dimethyl-1H-benzo[D]imidazole-2-thiol
CAS 116643-17-5C9H10N2S
2-Sulfanylidene-2,3-dihydro-1H-1,3-benzodiazole-5-carboxylic acid
CAS 58089-25-1C8H6N2O2S
2-Mercaptobenzimidazole
CAS 583-39-1C7H6N2S
2H-Benzimidazole-2-thione, 1,3-dihydro-5-methyl-
CAS 27231-36-3C8H8N2S
1-(Propan-2-yl)-1H-1,3-benzodiazole-2-thiol
CAS 2416-65-1C10H12N2S
1-Propyl-1H-benzimidazole-2-thiol
CAS 67624-25-3C10H12N2S
1-Isobutyl-1H-benzimidazole-2-thiol
CAS 55489-14-0C11H14N2S
1-Ethyl-1H-benzimidazole-2-thiol
CAS 39573-31-4C9H10N2S
5-Ethoxy-1-methyl-1H-benzimidazole-2-thiol
CAS 302812-79-9C10H12N2OS
3-(3-Methyl-2-thioxo-2,3-dihydro-benzoimidazol-1-yl)-propionic acid
CAS 247128-23-0C11H12N2O2S
![1,5-Dimethyl-1H-benzo[d]imidazole-2(3H)-thione chemical structure, C9H10N2S, CAS 149530-79-0](/s/NUQZVIXXDIASPQ-UHFFFAOYSA-N.svg)
1,5-Dimethyl-1H-benzo[d]imidazole-2(3H)-thione
CAS 149530-79-0C9H10N2S
5-Ethoxy-2-mercaptobenzimidazole
CAS 55489-15-1C9H10N2OS
![1-(2-Thioxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)ethanone chemical structure, C9H8N2OS, CAS 21541-32-2](/s/GNCIGVATRUZYHG-UHFFFAOYSA-N.svg)
1-(2-Thioxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)ethanone
CAS 21541-32-2C9H8N2OS
1,3-Bis(difluoromethyl)-2,3-dihydro-1H-1,3-benzodiazole-2-thione
CAS 329269-79-6C9H6F4N2S
1-Amino-3-ethyl-1,3-dihydro-2H-benzimidazole-2-thione
CAS 133636-06-3C9H11N3S
5-Methoxy-1-methyl-1H-benzimidazole-2-thiol
CAS 58764-00-4C9H10N2OS
![3-[3-(3-Amino-3-oxopropyl)-2-sulfanylidenebenzimidazol-1-yl]propanamide chemical structure, C13H16N4O2S, CAS 300686-10-6](/s/HJWJVKQULWCKTL-UHFFFAOYSA-N.svg)
3-[3-(3-Amino-3-oxopropyl)-2-sulfanylidenebenzimidazol-1-yl]propanamide
CAS 300686-10-6C13H16N4O2S
1-(3-Methyl-butyl)-1H-benzoimidazole-2-thiol
CAS 610275-11-1C12H16N2S
6-Chloro-5-fluorobenzimidazole-2-thiol
CAS 142313-30-2C7H4ClFN2S
5,6-Dimethoxy-1H-benzimidazole-2-thiol
CAS 74004-74-3C9H10N2O2S
![Methyl 4-[2-sulfanyl-5-(trifluoromethyl)-1H-1,3-benzimidazol-1-yl]butanoate chemical structure, C13H13F3N2O2S, CAS 400736-31-4](/s/RIQJKQQYPVZTPT-UHFFFAOYSA-N.svg)
Methyl 4-[2-sulfanyl-5-(trifluoromethyl)-1H-1,3-benzimidazol-1-yl]butanoate
CAS 400736-31-4C13H13F3N2O2S
- N-Propargyl 2-mercaptobenzimidazole80276-21-7C10H8N2S
- 9 suppliers1-Methyl-1H-benzimidazole-2-thiol2360-22-7C8H8N2S
- 2H-Benzimidazole-2-thione, 1,3-bis(chloromethyl)-1,3-dihydro-59103-38-7C9H8Cl2N2S
- 3-[3-(2-Cyanoethyl)-2-sulfanylidenebenzimidazol-1-yl]propanenitrile56172-22-6C13H12N4S
- 7 suppliers2-Benzimidazolinethione, 5-chloro-25369-78-2C7H5ClN2S
- 1-Ethyl-2-sulfanyl-1H-1,3-benzodiazole-5-carboxylic acid100440-62-8C10H10N2O2S
- 5,7-Dichloro-1H-1,3-benzodiazole-2-thiol99122-24-4C7H4Cl2N2S
- 1-Ethyl-2-mercapto-1H-benzoimidazole-5-carboxylic acid ethyl ester295345-27-6C12H14N2O2S
- N-Butyl-2-sulfanyl-1H-1,3-benzodiazole-6-sulfonamide519150-45-9C11H15N3O2S2
- 5-(Trifluoromethyl)-1H-benzo[d]imidazole-2-thiol86604-73-1C8H5F3N2S
- 5,6-Dimethyl-1H-benzimidazole-2-thiol3287-79-4C9H10N2S
- 5 suppliers6-Amino-2-mercaptobenzimidazole2818-66-8C7H7N3S
- 5-Chloro-1-isopropyl-1H-benzo[d]imidazole-2-thiol175276-96-7C10H11ClN2S
- 4-Bromo-6-(trifluoromethyl)benzimidazole-2-thiol175135-17-8C8H4BrF3N2S
- 2-Mercapto-5-benzimidazolesulfonic acid58089-27-3C7H6N2O3S2
- 1-Methyl-5-(trifluoromethyl)-2,3-dihydro-1H-benzo[d]imidazole-2-thione7341-87-9C9H7F3N2S
- 1,3-Dihydro-1-(1-methylethyl)-5-(trifluoromethyl)-2H-benzimidazole-2-thione209671-17-0C11H11F3N2S
- 2-Methylbutanoic acid compound with 6-methyl-1H-benzimidazole-2-thiol (1:1)884242-13-1C13H18N2O2S
- 2-(2-Sulfanyl-1H-benzimidazol-1-yl)acetamide884242-21-1C9H9N3OS
- 5,6-Dichloro-1H-benzimidazole-2-thiol19462-98-7C7H4Cl2N2S
- 4-Chloro-1,3-dihydro-6-(trifluoromethyl)-2H-benzimidazole-2-thione175135-18-9C8H4ClF3N2S
- 3-(2-Mercapto-benzoimidazol-1-yl)-propionitrile56172-24-8C10H9N3S
- 1-Butyl-1H-benzoimidazole-2-thiol67624-27-5C11H14N2S
- 1-(Methylpropyl)benzimidazole-2-thiol75080-18-1C11H14N2S
Related scaffolds
Same ring framework with different atoms or bond orders
![Scaffold c1ccc2[nH]ccc2c1](/scaffold/SIKJAQJRHWYJAI-UHFFFAOYSA-N/structure.svg)
c1ccc2[nH]ccc2c12,455 chemicals![Scaffold c1ccc2[nH]cnc2c1](/scaffold/HYZJCKYKOHLVJF-UHFFFAOYSA-N/structure.svg)
c1ccc2[nH]cnc2c11,206 chemicals![Scaffold c1ccc2[nH]ncc2c1](/scaffold/BAXOFTOLAUCFNW-UHFFFAOYSA-N/structure.svg)
c1ccc2[nH]ncc2c1795 chemicals
c1ccc2scnc2c1756 chemicals
c1ccc2occc2c1632 chemicals
c1ccc2c(c1)CCC2621 chemicals
c1ccc2c(c1)OCO2536 chemicals
c1ccc2sccc2c1529 chemicals
c1ccn2ccnc2c1525 chemicals
c1ccc2c(c1)CCN2440 chemicals![Scaffold O=c1[nH]c(=O)c2[nH]cnc2[nH]1](/scaffold/LRFVTYWOQMYALW-UHFFFAOYSA-N/structure.svg)
O=c1[nH]c(=O)c2[nH]cnc2[nH]1411 chemicals
O=C1NC(=O)c2ccccc21352 chemicals