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Murcko scaffold

1-(2-Pyridinyl)-1H-benzimidazole scaffold

46 chemicals on CompoundList share this ring system.

Rings
3
Scaffold atoms
15
Chemicals
46
With full pages
11
Scaffold SMILES

c1ccc(-n2cnc3ccccc32)nc1

A Bemis-Murcko scaffold is what remains of a molecule when every side chain is removed: the rings and the chains that link them. Chemicals that share a scaffold often belong to the same compound series, which helps when you look for analogues, alternative suppliers or related building blocks.

Substructure search with this scaffoldOpen the 1-(2-Pyridinyl)-1H-benzimidazole page
Murcko scaffold c1ccc(-n2cnc3ccccc32)nc1

Computed from the structures of the chemicals listed here. Stereo and charges are removed before the scaffold is taken.

Chemicals with this scaffold

Open one to see its structure, properties and suppliers.

Showing 1 to 46 of 46 chemicals

1-(3-Nitropyridin-2-yl)-1H-benzo[d]imidazole chemical structure, C12H8N4O2, CAS 675870-91-4
1-(3-Nitropyridin-2-yl)-1H-benzo[d]imidazole
CAS 675870-91-4C12H8N4O2
1-Methyl-3-(5-nitropyridin-2-yl)benzimidazol-1-ium, iodide chemical structure, C13H11IN4O2, CAS 1035452-45-9
1-Methyl-3-(5-nitropyridin-2-yl)benzimidazol-1-ium, iodide
CAS 1035452-45-9C13H11IN4O2
1-(5-Nitropyridin-2-yl)-1H-benzo[d]imidazole chemical structure, C12H8N4O2, CAS 5342-66-5
1-(5-Nitropyridin-2-yl)-1H-benzo[d]imidazole
CAS 5342-66-5C12H8N4O2
1-(2-Pyridinyl)-1H-benzimidazole chemical structure, C12H9N3, CAS 25660-37-1
1-(2-Pyridinyl)-1H-benzimidazole
CAS 25660-37-1C12H9N3
Methyl 6-(1H-1,3-benzimidazol-1-yl)nicotinate chemical structure, C14H11N3O2, CAS 400078-71-9
Methyl 6-(1H-1,3-benzimidazol-1-yl)nicotinate
CAS 400078-71-9C14H11N3O2
6-(1H-1,3-Benzodiazol-1-yl)pyridine-3-carboxylic acid chemical structure, C13H9N3O2, CAS 400078-72-0
6-(1H-1,3-Benzodiazol-1-yl)pyridine-3-carboxylic acid
CAS 400078-72-0C13H9N3O2
5,6-Dimethyl-1-(3-nitropyridin-2-yl)-1H-1,3-benzodiazole chemical structure, C14H12N4O2, CAS 848340-90-9
5,6-Dimethyl-1-(3-nitropyridin-2-yl)-1H-1,3-benzodiazole
CAS 848340-90-9C14H12N4O2
[6-(1H-1,3-Benzodiazol-1-yl)pyridin-3-yl]methanamine chemical structure, C13H12N4, CAS 953748-84-0
[6-(1H-1,3-Benzodiazol-1-yl)pyridin-3-yl]methanamine
CAS 953748-84-0C13H12N4
6-(1H-Benzimidazol-1-yl)-5-chloro-3-pyridinecarboxylic acid chemical structure, C13H8ClN3O2, CAS 953752-65-3
6-(1H-Benzimidazol-1-yl)-5-chloro-3-pyridinecarboxylic acid
CAS 953752-65-3C13H8ClN3O2
6-(1H-Benzimidazol-1-yl)-3-pyridinamine chemical structure, C12H10N4, CAS 937603-91-3
6-(1H-Benzimidazol-1-yl)-3-pyridinamine
CAS 937603-91-3C12H10N4
2-(1H-1,3-Benzodiazol-1-yl)pyridine-3-carboxylic acid chemical structure, C13H9N3O2, CAS 954569-88-1
2-(1H-1,3-Benzodiazol-1-yl)pyridine-3-carboxylic acid
CAS 954569-88-1C13H9N3O2
[2-(1H-1,3-Benzodiazol-1-yl)pyridin-3-yl]methanamine chemical structure, C13H12N4, CAS 954572-63-5
[2-(1H-1,3-Benzodiazol-1-yl)pyridin-3-yl]methanamine
CAS 954572-63-5C13H12N4
6-(2-Methyl-1H-1,3-benzodiazol-1-yl)pyridin-3-amine chemical structure, C13H12N4, CAS 937603-93-5
6-(2-Methyl-1H-1,3-benzodiazol-1-yl)pyridin-3-amine
CAS 937603-93-5C13H12N4
6-(2-Methyl-1H-benzimidazol-1-yl)-3-pyridinemethanamine chemical structure, C14H14N4, CAS 1016521-83-7
6-(2-Methyl-1H-benzimidazol-1-yl)-3-pyridinemethanamine
CAS 1016521-83-7C14H14N4
2-Methyl-1-(pyridin-2-yl)-1H-benzimidazole chemical structure, C13H11N3, CAS 38794-17-1
2-Methyl-1-(pyridin-2-yl)-1H-benzimidazole
CAS 38794-17-1C13H11N3
6-(1H-1,3-Benzodiazol-1-yl)-N'-hydroxypyridine-3-carboximidamide chemical structure, C13H11N5O, CAS 1017047-94-7
6-(1H-1,3-Benzodiazol-1-yl)-N'-hydroxypyridine-3-carboximidamide
CAS 1017047-94-7C13H11N5O
2-Methyl-1-(5-nitropyridin-2-yl)-1H-benzimidazole chemical structure, C13H10N4O2, CAS 1018166-82-9
2-Methyl-1-(5-nitropyridin-2-yl)-1H-benzimidazole
CAS 1018166-82-9C13H10N4O2
6-(1H-1,3-Benzodiazol-1-yl)-3-chloropyridine-2-carboxylic acid chemical structure, C13H8ClN3O2, CAS 1020945-76-9
6-(1H-1,3-Benzodiazol-1-yl)-3-chloropyridine-2-carboxylic acid
CAS 1020945-76-9C13H8ClN3O2
Ethyl 6-(benzimidazol-1-yl)nicotinate chemical structure, C15H13N3O2, CAS 1100290-98-9
Ethyl 6-(benzimidazol-1-yl)nicotinate
CAS 1100290-98-9C15H13N3O2
2-Chloro-1-(5-nitropyridin-2-yl)-1H-benzo[d]imidazole chemical structure, C12H7ClN4O2, CAS 1146080-31-0
2-Chloro-1-(5-nitropyridin-2-yl)-1H-benzo[d]imidazole
CAS 1146080-31-0C12H7ClN4O2
2-Chloro-1-(3-nitro-pyridin-2-yl)-1H-benzoimidazole chemical structure, C12H7ClN4O2, CAS 1146080-68-3
2-Chloro-1-(3-nitro-pyridin-2-yl)-1H-benzoimidazole
CAS 1146080-68-3C12H7ClN4O2
2-(2-Chloro-benzoimidazol-1-yl)-nicotinonitrile chemical structure, C13H7ClN4, CAS 1146080-76-3
2-(2-Chloro-benzoimidazol-1-yl)-nicotinonitrile
CAS 1146080-76-3C13H7ClN4
6-(1H-1,3-Benzodiazol-1-yl)pyridine-3-carboximidamide dihydrochloride chemical structure, C13H13Cl2N5, CAS 1221725-99-0
6-(1H-1,3-Benzodiazol-1-yl)pyridine-3-carboximidamide dihydrochloride
CAS 1221725-99-0C13H13Cl2N5
2-(1H-1,3-Benzodiazol-1-yl)pyridine-4-carboximidamide hydrochloride chemical structure, C13H12ClN5, CAS 1221725-54-7
2-(1H-1,3-Benzodiazol-1-yl)pyridine-4-carboximidamide hydrochloride
CAS 1221725-54-7C13H12ClN5