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Murcko scaffold

2-(Pyridin-3-yl)-1H-1,3-benzodiazole scaffold

120 chemicals on CompoundList share this ring system.

Rings
3
Scaffold atoms
15
Chemicals
120
With full pages
26
Scaffold SMILES

c1cncc(-c2nc3ccccc3[nH]2)c1

A Bemis-Murcko scaffold is what remains of a molecule when every side chain is removed: the rings and the chains that link them. Chemicals that share a scaffold often belong to the same compound series, which helps when you look for analogues, alternative suppliers or related building blocks.

Substructure search with this scaffoldOpen the 2-(Pyridin-3-yl)-1H-1,3-benzodiazole page
Murcko scaffold c1cncc(-c2nc3ccccc3[nH]2)c1

Computed from the structures of the chemicals listed here. Stereo and charges are removed before the scaffold is taken.

Chemicals with this scaffold

Open one to see its structure, properties and suppliers.

Showing 1 to 48 of 120 chemicals

2-(Pyridin-3-yl)-1H-1,3-benzodiazole chemical structure, C12H9N3, CAS 1137-67-3
2-(Pyridin-3-yl)-1H-1,3-benzodiazole
CAS 1137-67-3C12H9N3
6-Nitro-2-(pyridin-3-yl)-1H-benzimidazole chemical structure, C12H8N4O2, CAS 145861-59-2
6-Nitro-2-(pyridin-3-yl)-1H-benzimidazole
CAS 145861-59-2C12H8N4O2
N-(2-Pyridin-3-yl-1H-benzoimidazol-5-yl)-acetamide chemical structure, C14H12N4O, CAS 327032-51-9
N-(2-Pyridin-3-yl-1H-benzoimidazol-5-yl)-acetamide
CAS 327032-51-9C14H12N4O
2-(6-Methylpyridin-3-yl)-1H-benzimidazole chemical structure, C13H11N3, CAS 67273-41-0
2-(6-Methylpyridin-3-yl)-1H-benzimidazole
CAS 67273-41-0C13H11N3
1-Methyl-2-pyridin-3-ylbenzimidazole chemical structure, C13H11N3, CAS 297149-01-0
1-Methyl-2-pyridin-3-ylbenzimidazole
CAS 297149-01-0C13H11N3
2-(Pyridin-3-yl)-1H-1,3-benzodiazol-5-amine chemical structure, C12H10N4, CAS 1571-99-9
2-(Pyridin-3-yl)-1H-1,3-benzodiazol-5-amine
CAS 1571-99-9C12H10N4
2-(2-Methylsulfanylpyridin-3-yl)-1H-benzimidazole chemical structure, C13H11N3S, CAS 143426-38-4
2-(2-Methylsulfanylpyridin-3-yl)-1H-benzimidazole
CAS 143426-38-4C13H11N3S
2-((3-(1H-Benzo[d]imidazol-2-yl)pyridin-2-yl)thio)acetamide chemical structure, C14H12N4OS, CAS 838100-67-7
2-((3-(1H-Benzo[d]imidazol-2-yl)pyridin-2-yl)thio)acetamide
CAS 838100-67-7C14H12N4OS
5,6-Dichloro-2-(2-chloro-3-pyridinyl)-1-ethyl-1H-1,3-benzimidazole chemical structure, C14H10Cl3N3, CAS 338774-24-6
5,6-Dichloro-2-(2-chloro-3-pyridinyl)-1-ethyl-1H-1,3-benzimidazole
CAS 338774-24-6C14H10Cl3N3
5,6-Dichloro-2-(2-chloro-3-pyridinyl)-1-methyl-1H-1,3-benzimidazole chemical structure, C13H8Cl3N3, CAS 861208-45-9
5,6-Dichloro-2-(2-chloro-3-pyridinyl)-1-methyl-1H-1,3-benzimidazole
CAS 861208-45-9C13H8Cl3N3
5,6-Dichloro-2-(2-chloro-3-pyridinyl)-1-propyl-1H-1,3-benzimidazole chemical structure, C15H12Cl3N3, CAS 338774-34-8
5,6-Dichloro-2-(2-chloro-3-pyridinyl)-1-propyl-1H-1,3-benzimidazole
CAS 338774-34-8C15H12Cl3N3
5,6-Dichloro-2-(2-chloro-3-pyridinyl)-1-(2-propynyl)-1H-1,3-benzimidazole chemical structure, C15H8Cl3N3, CAS 338774-35-9
5,6-Dichloro-2-(2-chloro-3-pyridinyl)-1-(2-propynyl)-1H-1,3-benzimidazole
CAS 338774-35-9C15H8Cl3N3
2-(6-Chloro-3-pyridinyl)-1-methyl-1H-1,3-benzimidazole chemical structure, C13H10ClN3, CAS 337920-52-2
2-(6-Chloro-3-pyridinyl)-1-methyl-1H-1,3-benzimidazole
CAS 337920-52-2C13H10ClN3
2-(6-Chloro-3-pyridinyl)-1-isopropyl-5-(trifluoromethyl)-1H-1,3-benzimidazole chemical structure, C16H13ClF3N3, CAS 400074-14-8
2-(6-Chloro-3-pyridinyl)-1-isopropyl-5-(trifluoromethyl)-1H-1,3-benzimidazole
CAS 400074-14-8C16H13ClF3N3
5,6-Dichloro-2-(2-chloro-3-pyridinyl)-1H-1,3-benzimidazole chemical structure, C12H6Cl3N3, CAS 337920-55-5
5,6-Dichloro-2-(2-chloro-3-pyridinyl)-1H-1,3-benzimidazole
CAS 337920-55-5C12H6Cl3N3
2-(6-Chloro-3-pyridinyl)-1,5,6-trimethyl-1H-1,3-benzimidazole chemical structure, C15H14ClN3, CAS 337920-57-7
2-(6-Chloro-3-pyridinyl)-1,5,6-trimethyl-1H-1,3-benzimidazole
CAS 337920-57-7C15H14ClN3
Ethyl 2-(5,6-dichloro-2-(2-chloro-3-pyridinyl)-1H-benzimidazol-1-yl)acetate chemical structure, C16H12Cl3N3O2, CAS 337920-66-8
Ethyl 2-(5,6-dichloro-2-(2-chloro-3-pyridinyl)-1H-benzimidazol-1-yl)acetate
CAS 337920-66-8C16H12Cl3N3O2
1-Allyl-5,6-dichloro-2-(2-chloro-3-pyridinyl)-1H-1,3-benzimidazole chemical structure, C15H10Cl3N3, CAS 337920-67-9
1-Allyl-5,6-dichloro-2-(2-chloro-3-pyridinyl)-1H-1,3-benzimidazole
CAS 337920-67-9C15H10Cl3N3
5-Chloro-2-(6-chloro-3-pyridinyl)-1H-1,3-benzimidazole chemical structure, C12H7Cl2N3, CAS 337920-73-7
5-Chloro-2-(6-chloro-3-pyridinyl)-1H-1,3-benzimidazole
CAS 337920-73-7C12H7Cl2N3
5,6-Dichloro-2-(6-chloro-3-pyridinyl)-1-methyl-1H-1,3-benzimidazole chemical structure, C13H8Cl3N3, CAS 337920-75-9
5,6-Dichloro-2-(6-chloro-3-pyridinyl)-1-methyl-1H-1,3-benzimidazole
CAS 337920-75-9C13H8Cl3N3
5-Chloro-2-(6-chloro-3-pyridinyl)-1-methyl-1H-1,3-benzimidazole chemical structure, C13H9Cl2N3, CAS 400076-01-9
5-Chloro-2-(6-chloro-3-pyridinyl)-1-methyl-1H-1,3-benzimidazole
CAS 400076-01-9C13H9Cl2N3
2-(2-Chloro-3-pyridinyl)-1-methyl-1H-1,3-benzimidazole chemical structure, C13H10ClN3, CAS 400081-23-4
2-(2-Chloro-3-pyridinyl)-1-methyl-1H-1,3-benzimidazole
CAS 400081-23-4C13H10ClN3
2-(2-Chloro-3-pyridinyl)-1-ethyl-1H-1,3-benzimidazole chemical structure, C14H12ClN3, CAS 400081-24-5
2-(2-Chloro-3-pyridinyl)-1-ethyl-1H-1,3-benzimidazole
CAS 400081-24-5C14H12ClN3
Ethyl 2-[2-(2-chloro-3-pyridinyl)-1H-1,3-benzimidazol-1-yl]acetate chemical structure, C16H14ClN3O2, CAS 400081-25-6
Ethyl 2-[2-(2-chloro-3-pyridinyl)-1H-1,3-benzimidazol-1-yl]acetate
CAS 400081-25-6C16H14ClN3O2