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Murcko scaffold

Pyrimidine scaffold

19,000 chemicals on CompoundList share this ring system.

Rings
1
Scaffold atoms
6
Chemicals
19,000
With full pages
2,066
Scaffold SMILES

c1cncnc1

A Bemis-Murcko scaffold is what remains of a molecule when every side chain is removed: the rings and the chains that link them. Chemicals that share a scaffold often belong to the same compound series, which helps when you look for analogues, alternative suppliers or related building blocks. This is a very common single ring, so the list below is broad.

Substructure search with this scaffoldOpen the Pyrimidine page
Murcko scaffold c1cncnc1

Computed from the structures of the chemicals listed here. Stereo and charges are removed before the scaffold is taken.

Chemicals with this scaffold

Open one to see its structure, properties and suppliers.

Showing 625 to 672 of 19,000 chemicals

N-[4-Chloro-6-methyl-5-(3-methylbutyl)pyrimidin-2-yl]acetamide chemical structure, C12H18ClN3O, CAS 17001-92-2
N-[4-Chloro-6-methyl-5-(3-methylbutyl)pyrimidin-2-yl]acetamide
CAS 17001-92-2C12H18ClN3O
2,4-Diaminopyrimidine-5-carbaldehyde chemical structure, C5H6N4O, CAS 20781-06-0
2,4-Diaminopyrimidine-5-carbaldehyde
CAS 20781-06-0C5H6N4O
2-(2-Methoxyethoxy)pyrimidin-4-amine chemical structure, C7H11N3O2, CAS 60722-66-9
2-(2-Methoxyethoxy)pyrimidin-4-amine
CAS 60722-66-9C7H11N3O2
6-Chloro-N-methylpyrimidin-4-amine chemical structure, C5H6ClN3, CAS 65766-32-7
6-Chloro-N-methylpyrimidin-4-amine
CAS 65766-32-7C5H6ClN3
5-Propylpyrimidine-2,4,6-triamine chemical structure, C7H13N5, CAS 4254-54-0
5-Propylpyrimidine-2,4,6-triamine
CAS 4254-54-0C7H13N5
5-(3-Methylbutyl)pyrimidine-2,4,6-triamine chemical structure, C9H17N5, CAS 4038-50-0
5-(3-Methylbutyl)pyrimidine-2,4,6-triamine
CAS 4038-50-0C9H17N5
2-Chloro-N-ethyl-6-methylpyrimidin-4-amine chemical structure, C7H10ClN3, CAS 502141-81-3
2-Chloro-N-ethyl-6-methylpyrimidin-4-amine
CAS 502141-81-3C7H10ClN3
Methyl 2-chloro-6-methoxypyrimidine-4-carboxylate chemical structure, C7H7ClN2O3, CAS 127861-30-7
Methyl 2-chloro-6-methoxypyrimidine-4-carboxylate
CAS 127861-30-7C7H7ClN2O3
Methyl 2,6-bis(methylsulfanyl)pyrimidine-4-carboxylate chemical structure, C8H10N2O2S2, CAS 502142-27-0
Methyl 2,6-bis(methylsulfanyl)pyrimidine-4-carboxylate
CAS 502142-27-0C8H10N2O2S2
2-Chloro-6-(trichloromethyl)pyrimidin-4-amine chemical structure, C5H3Cl4N3, CAS 6789-63-5
2-Chloro-6-(trichloromethyl)pyrimidin-4-amine
CAS 6789-63-5C5H3Cl4N3
2-Chloro-6-methylpyrimidin-4-amine chemical structure, C5H6ClN3, CAS 14394-60-6
2-Chloro-6-methylpyrimidin-4-amine
CAS 14394-60-6C5H6ClN3
Methyl 6-amino-2,5-dichloropyrimidine-4-carboxylate chemical structure, C6H5Cl2N3O2, CAS 502142-81-6
Methyl 6-amino-2,5-dichloropyrimidine-4-carboxylate
CAS 502142-81-6C6H5Cl2N3O2
5-Chloro-4-methyl-2,6-bis(methylsulfonyl)pyrimidine chemical structure, C7H9ClN2O4S2, CAS 17901-17-6
5-Chloro-4-methyl-2,6-bis(methylsulfonyl)pyrimidine
CAS 17901-17-6C7H9ClN2O4S2
2,4-Bis(butylsulfanyl)-6-methylpyrimidine chemical structure, C13H22N2S2, CAS 55749-49-0
2,4-Bis(butylsulfanyl)-6-methylpyrimidine
CAS 55749-49-0C13H22N2S2
2-Amino-5-[(5-methylpyrimidin-2-yl)amino]pentanoic acid chemical structure, C10H16N4O2, CAS 55684-34-9
2-Amino-5-[(5-methylpyrimidin-2-yl)amino]pentanoic acid
CAS 55684-34-9C10H16N4O2
2-Amino-5-[(5-propylpyrimidin-2-yl)amino]pentanoic acid chemical structure, C12H20N4O2, CAS 55713-33-2
2-Amino-5-[(5-propylpyrimidin-2-yl)amino]pentanoic acid
CAS 55713-33-2C12H20N4O2
2-Amino-5-[(5-butylpyrimidin-2-yl)amino]pentanoic acid chemical structure, C13H22N4O2, CAS 55684-35-0
2-Amino-5-[(5-butylpyrimidin-2-yl)amino]pentanoic acid
CAS 55684-35-0C13H22N4O2
2-Amino-5-[(5-pentylpyrimidin-2-yl)amino]pentanoic acid chemical structure, C14H24N4O2, CAS 55684-36-1
2-Amino-5-[(5-pentylpyrimidin-2-yl)amino]pentanoic acid
CAS 55684-36-1C14H24N4O2
Glycine, N-(4,6-dimethyl-2-pyrimidinyl)- chemical structure, C8H11N3O2, CAS 55684-37-2
Glycine, N-(4,6-dimethyl-2-pyrimidinyl)-
CAS 55684-37-2C8H11N3O2
N-(4,6-Dimethylpyrimidin-2-yl)-N-methylglycine chemical structure, C9H13N3O2, CAS 55684-40-7
N-(4,6-Dimethylpyrimidin-2-yl)-N-methylglycine
CAS 55684-40-7C9H13N3O2
2-Amino-5-[(4,6-dimethylpyrimidin-2-yl)amino]pentanoic acid chemical structure, C11H18N4O2, CAS 55684-38-3
2-Amino-5-[(4,6-dimethylpyrimidin-2-yl)amino]pentanoic acid
CAS 55684-38-3C11H18N4O2
2-Amino-6-[(4,6-dimethylpyrimidin-2-yl)amino]hexanoic acid chemical structure, C12H20N4O2, CAS 55684-39-4
2-Amino-6-[(4,6-dimethylpyrimidin-2-yl)amino]hexanoic acid
CAS 55684-39-4C12H20N4O2
2,4,5-Trichloro-6-methoxypyrimidine chemical structure, C5H3Cl3N2O, CAS 1022659-70-6
2,4,5-Trichloro-6-methoxypyrimidine
CAS 1022659-70-6C5H3Cl3N2O
6-Methyl-2-(methylthio)pyrimidin-4-amine chemical structure, C6H9N3S, CAS 24888-93-5
6-Methyl-2-(methylthio)pyrimidin-4-amine
CAS 24888-93-5C6H9N3S