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Murcko scaffold

2-((Pyridin-2-ylmethyl)thio)-1H-benzo[d]imidazole scaffold

65 chemicals on CompoundList share this ring system.

Rings
3
Scaffold atoms
17
Chemicals
65
With full pages
15
Scaffold SMILES

c1ccc(CSc2nc3ccccc3[nH]2)nc1

A Bemis-Murcko scaffold is what remains of a molecule when every side chain is removed: the rings and the chains that link them. Chemicals that share a scaffold often belong to the same compound series, which helps when you look for analogues, alternative suppliers or related building blocks.

Substructure search with this scaffoldOpen the 2-((Pyridin-2-ylmethyl)thio)-1H-benzo[d]imidazole page
Murcko scaffold c1ccc(CSc2nc3ccccc3[nH]2)nc1

Computed from the structures of the chemicals listed here. Stereo and charges are removed before the scaffold is taken.

Chemicals with this scaffold

Open one to see its structure, properties and suppliers.

Showing 1 to 48 of 65 chemicals

2-((2-Pyridinylmethyl)thio)-1H-benzimidazole-5-sulphonic acid chemical structure, C13H11N3O3S2, CAS 28020-71-5
2-((2-Pyridinylmethyl)thio)-1H-benzimidazole-5-sulphonic acid
CAS 28020-71-5C13H11N3O3S2
2-(((4-Methoxy-3-methyl-2-pyridinyl)methyl)thio)-6-(trifluoromethyl)-1H-benzimidazole chemical structure, C16H14F3N3OS, CAS 86604-69-5
2-(((4-Methoxy-3-methyl-2-pyridinyl)methyl)thio)-6-(trifluoromethyl)-1H-benzimidazole
CAS 86604-69-5C16H14F3N3OS
Omeprazole sulfide chemical structure, C17H19N3O2S, CAS 73590-85-9
Omeprazole sulfide
CAS 73590-85-9C17H19N3O2S
2-((Pyridin-2-ylmethyl)thio)-1H-benzo[d]imidazole chemical structure, C13H11N3S, CAS 23593-22-8
2-((Pyridin-2-ylmethyl)thio)-1H-benzo[d]imidazole
CAS 23593-22-8C13H11N3S
Lansoprazole sulfide chemical structure, C16H14F3N3OS, CAS 103577-40-8
Lansoprazole sulfide
CAS 103577-40-8C16H14F3N3OS
6-Methyl-2-(pyridin-2-ylmethylsulfanyl)-1H-benzimidazole chemical structure, C14H13N3S, CAS 64948-83-0
6-Methyl-2-(pyridin-2-ylmethylsulfanyl)-1H-benzimidazole
CAS 64948-83-0C14H13N3S
5-Methoxy-2-(2-pyridylmethylthio)benzimidazole chemical structure, C14H13N3OS, CAS 64948-80-7
5-Methoxy-2-(2-pyridylmethylthio)benzimidazole
CAS 64948-80-7C14H13N3OS
4-Desmethoxy-4-chloro Omeprazole Sulfide chemical structure, C16H16ClN3OS, CAS 220757-74-4
4-Desmethoxy-4-chloro Omeprazole Sulfide
CAS 220757-74-4C16H16ClN3OS
Pantoprazole sulfide chemical structure, C16H15F2N3O3S, CAS 102625-64-9
Pantoprazole sulfide
CAS 102625-64-9C16H15F2N3O3S
2-{[(4-Chloro-3-methoxypyridin-2-yl)methyl]sulfanyl)-6-(difluoromethoxy)-1H-benzimidazole chemical structure, C15H12ClF2N3O2S, CAS 368890-20-4
2-{[(4-Chloro-3-methoxypyridin-2-yl)methyl]sulfanyl)-6-(difluoromethoxy)-1H-benzimidazole
CAS 368890-20-4C15H12ClF2N3O2S
Rabeprazole-thioether chemical structure, C18H21N3O2S, CAS 117977-21-6
Rabeprazole-thioether
CAS 117977-21-6C18H21N3O2S
1H-Benzimidazole, 2-[[(4-methoxy-3,5-dimethyl-2-pyridinyl)methyl]thio]- chemical structure, C16H17N3OS, CAS 73590-87-1
1H-Benzimidazole, 2-[[(4-methoxy-3,5-dimethyl-2-pyridinyl)methyl]thio]-
CAS 73590-87-1C16H17N3OS
4-Desmethoxypropoxyl-4-methoxy S-Deoxo Rabeprazole chemical structure, C15H15N3OS, CAS 102804-82-0
4-Desmethoxypropoxyl-4-methoxy S-Deoxo Rabeprazole
CAS 102804-82-0C15H15N3OS
2-[(4-Methoxyethoxy-3-methyl-2-pyridinyl)-methylthio]-benzimidazole chemical structure, C17H19N3O2S, CAS 121306-31-8
2-[(4-Methoxyethoxy-3-methyl-2-pyridinyl)-methylthio]-benzimidazole
CAS 121306-31-8C17H19N3O2S
Omeprazole sulfide N-Oxide chemical structure, C17H19N3O3S, CAS 142885-92-5
Omeprazole sulfide N-Oxide
CAS 142885-92-5C17H19N3O3S
Lansoprazole sulfide N-oxide chemical structure, C16H14F3N3O2S, CAS 163119-30-0
Lansoprazole sulfide N-oxide
CAS 163119-30-0C16H14F3N3O2S
4-Desmethoxy-4-nitro Omeprazole Sulfide chemical structure, C16H16N4O3S, CAS 142885-91-4
4-Desmethoxy-4-nitro Omeprazole Sulfide
CAS 142885-91-4C16H16N4O3S
2-[[(3-Methyl-4-nitro-2-pyridinyl)methyl]thio]-1H-benzimidazole chemical structure, C14H12N4O2S, CAS 152402-98-7
2-[[(3-Methyl-4-nitro-2-pyridinyl)methyl]thio]-1H-benzimidazole
CAS 152402-98-7C14H12N4O2S
2-[[(4-Chloro-3-methyl-2-pyridinyl)methyl]thio]-1H-benzimidazole chemical structure, C14H12ClN3S, CAS 103312-62-5
2-[[(4-Chloro-3-methyl-2-pyridinyl)methyl]thio]-1H-benzimidazole
CAS 103312-62-5C14H12ClN3S
2-[(4-Methoxy-3-methyl-2-pyridinyl)methylsulfanyl]-3H-benzimidazol-5-amine chemical structure, C15H16N4OS, CAS 910664-00-5
2-[(4-Methoxy-3-methyl-2-pyridinyl)methylsulfanyl]-3H-benzimidazol-5-amine
CAS 910664-00-5C15H16N4OS
1H-Benzimidazole, 2-[[[4-(2,2,2-trifluoroethoxy)-2-pyridinyl]methyl]thio]- chemical structure, C15H12F3N3OS, CAS 103577-39-5
1H-Benzimidazole, 2-[[[4-(2,2,2-trifluoroethoxy)-2-pyridinyl]methyl]thio]-
CAS 103577-39-5C15H12F3N3OS
2-[5-Methyl-4-((2,2,2-trifluorethoxy)-2-pyridinyl)-methylthio]-benzimidazole chemical structure, C16H14F3N3OS, CAS 103577-41-9
2-[5-Methyl-4-((2,2,2-trifluorethoxy)-2-pyridinyl)-methylthio]-benzimidazole
CAS 103577-41-9C16H14F3N3OS
2-({[3,5-Dimethyl-4-(2,2,2-trifluoroethoxy)pyridin-2-yl]methyl}sulfanyl)-1H-benzimidazole chemical structure, C17H16F3N3OS, CAS 103602-42-2
2-({[3,5-Dimethyl-4-(2,2,2-trifluoroethoxy)pyridin-2-yl]methyl}sulfanyl)-1H-benzimidazole
CAS 103602-42-2C17H16F3N3OS
6-(Difluoromethoxy)-2-[[(4,5-dimethoxy-2-pyridinyl)methyl]thio]-1H-benzimidazole chemical structure, C16H15F2N3O3S, CAS 102625-52-5
6-(Difluoromethoxy)-2-[[(4,5-dimethoxy-2-pyridinyl)methyl]thio]-1H-benzimidazole
CAS 102625-52-5C16H15F2N3O3S