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Murcko scaffold

2-((Pyridin-2-ylmethyl)thio)-1H-benzo[d]imidazole scaffold

65 chemicals on CompoundList share this ring system.

Rings
3
Scaffold atoms
17
Chemicals
65
With full pages
15
Scaffold SMILES

c1ccc(CSc2nc3ccccc3[nH]2)nc1

A Bemis-Murcko scaffold is what remains of a molecule when every side chain is removed: the rings and the chains that link them. Chemicals that share a scaffold often belong to the same compound series, which helps when you look for analogues, alternative suppliers or related building blocks.

Substructure search with this scaffoldOpen the 2-((Pyridin-2-ylmethyl)thio)-1H-benzo[d]imidazole page
Murcko scaffold c1ccc(CSc2nc3ccccc3[nH]2)nc1

Computed from the structures of the chemicals listed here. Stereo and charges are removed before the scaffold is taken.

Chemicals with this scaffold

Open one to see its structure, properties and suppliers.

Showing 49 to 65 of 65 chemicals

5-Hydroxy lansoprazole sulfide chemical structure, C16H14F3N3O2S, CAS 131926-96-0
5-Hydroxy lansoprazole sulfide
CAS 131926-96-0C16H14F3N3O2S
Omeprazole acid methyl ester sulfide chemical structure, C18H19N3O4S, CAS 120003-82-9
Omeprazole acid methyl ester sulfide
CAS 120003-82-9C18H19N3O4S
2-[[(4-Bromo-3-methyl-2-pyridinyl)methyl]thio]-1H-benzimidazole chemical structure, C14H12BrN3S, CAS 168167-43-9
2-[[(4-Bromo-3-methyl-2-pyridinyl)methyl]thio]-1H-benzimidazole
CAS 168167-43-9C14H12BrN3S
2-[[3,5-Dimethyl-4-(trideuteriomethoxy)-2-pyridinyl]methylsulfanyl]-6-methoxy-1H-benzimidazole chemical structure, C17H19N3O2S, CAS 922731-00-8
2-[[3,5-Dimethyl-4-(trideuteriomethoxy)-2-pyridinyl]methylsulfanyl]-6-methoxy-1H-benzimidazole
CAS 922731-00-8C17H19N3O2S
Rabeprazole impurity 47 chemical structure, C17H18ClN3OS, CAS 1632219-80-7
Rabeprazole impurity 47
CAS 1632219-80-7C17H18ClN3OS
4-Sulfonyloxy lansoprazole sulfide chemical structure, C16H14F3N3O5S2, CAS 1421609-89-3
4-Sulfonyloxy lansoprazole sulfide
CAS 1421609-89-3C16H14F3N3O5S2
5-Sulfonyloxy dexlansoprazole sulfide chemical structure, C16H14F3N3O5S2, CAS 1421696-11-8
5-Sulfonyloxy dexlansoprazole sulfide
CAS 1421696-11-8C16H14F3N3O5S2
4-Methoxy-6-(((6-methoxy-1H-benzimidazol-2-yl)thio)methyl)-5-methyl-3-pyridinemethanol chemical structure, C17H19N3O3S, CAS 103876-99-9
4-Methoxy-6-(((6-methoxy-1H-benzimidazol-2-yl)thio)methyl)-5-methyl-3-pyridinemethanol
CAS 103876-99-9C17H19N3O3S
Omeprazole sulfide 5-carboxylic acid chemical structure, C17H17N3O4S, CAS 103877-00-5
Omeprazole sulfide 5-carboxylic acid
CAS 103877-00-5C17H17N3O4S
2-(((3-Chloro-5-(trifluoromethyl)pyridin-2-yl)methyl)thio)-1H-benzo[d]imidazole chemical structure, C14H9ClF3N3S, CAS 1823183-58-9
2-(((3-Chloro-5-(trifluoromethyl)pyridin-2-yl)methyl)thio)-1H-benzo[d]imidazole
CAS 1823183-58-9C14H9ClF3N3S
2-[(3,4-Dimethoxy-2-pyridinyl)methylsulfanyl]-3H-benzimidazol-5-ol chemical structure, C15H15N3O3S, CAS 1166386-02-2
2-[(3,4-Dimethoxy-2-pyridinyl)methylsulfanyl]-3H-benzimidazol-5-ol
CAS 1166386-02-2C15H15N3O3S
Sodium 2-(((4-(3-methoxypropoxy)-3-methylpyridin-2-yl)methyl)thio)benzo[d]imidazol-1-ide chemical structure, C18H20N3NaO2S, CAS 154393-98-3
Sodium 2-(((4-(3-methoxypropoxy)-3-methylpyridin-2-yl)methyl)thio)benzo[d]imidazol-1-ide
CAS 154393-98-3C18H20N3NaO2S
2-(((4-Methoxy-3-methylpyridin-2-yl)methyl)thio)-N-propyl-1H-benzo[d]imidazol-6-amine chemical structure, C18H22N4OS, CAS 1298015-58-3
2-(((4-Methoxy-3-methylpyridin-2-yl)methyl)thio)-N-propyl-1H-benzo[d]imidazol-6-amine
CAS 1298015-58-3C18H22N4OS
2-(((1H-Benzo[d]imidazol-2-yl)thio)methyl)-3-methyl-4-nitropyridine 1-oxide chemical structure, C14H12N4O3S, CAS 163119-29-7
2-(((1H-Benzo[d]imidazol-2-yl)thio)methyl)-3-methyl-4-nitropyridine 1-oxide
CAS 163119-29-7C14H12N4O3S
6-Methyl-2-(((3-methyl-4-(2,2,2-trifluoroethoxy)pyridin-2-yl)methyl)thio)-1H-benzo[d]imidazole chemical structure, C17H16F3N3OS, CAS 1182733-62-5
6-Methyl-2-(((3-methyl-4-(2,2,2-trifluoroethoxy)pyridin-2-yl)methyl)thio)-1H-benzo[d]imidazole
CAS 1182733-62-5C17H16F3N3OS
Esomeprazole impurity 23 chemical structure, C17H19N3O3S2, CAS 1422063-97-5
Esomeprazole impurity 23
CAS 1422063-97-5C17H19N3O3S2
Omeprazole impurity 34 chemical structure, C18H21N3O2S, CAS 2243644-61-1
Omeprazole impurity 34
CAS 2243644-61-1C18H21N3O2S