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Murcko scaffold

Pyrimidine scaffold

19,000 chemicals on CompoundList share this ring system.

Rings
1
Scaffold atoms
6
Chemicals
19,000
With full pages
2,066
Scaffold SMILES

c1cncnc1

A Bemis-Murcko scaffold is what remains of a molecule when every side chain is removed: the rings and the chains that link them. Chemicals that share a scaffold often belong to the same compound series, which helps when you look for analogues, alternative suppliers or related building blocks. This is a very common single ring, so the list below is broad.

Substructure search with this scaffoldOpen the Pyrimidine page
Murcko scaffold c1cncnc1

Computed from the structures of the chemicals listed here. Stereo and charges are removed before the scaffold is taken.

Chemicals with this scaffold

Open one to see its structure, properties and suppliers.

Showing 1,585 to 1,632 of 19,000 chemicals

N-Isopropyl-2-(isopropylamino)-4-methyl-5-pyrimidinecarboxamide chemical structure, C12H20N4O, CAS 861212-77-3
N-Isopropyl-2-(isopropylamino)-4-methyl-5-pyrimidinecarboxamide
CAS 861212-77-3C12H20N4O
2-Methanesulfonylpyrimidin-5-ol chemical structure, C5H6N2O3S, CAS 16290-90-7
2-Methanesulfonylpyrimidin-5-ol
CAS 16290-90-7C5H6N2O3S
N4-allyl-5-nitropyrimidine-4,6-diamine chemical structure, C7H9N5O2, CAS 450344-67-9
N4-allyl-5-nitropyrimidine-4,6-diamine
CAS 450344-67-9C7H9N5O2
6-Methoxy-5-nitropyrimidine-2,4-diamine chemical structure, C5H7N5O3, CAS 31748-18-2
6-Methoxy-5-nitropyrimidine-2,4-diamine
CAS 31748-18-2C5H7N5O3
2-Cyano-N-(pyrimidin-2-yl)acetamide chemical structure, C7H6N4O, CAS 90158-72-8
2-Cyano-N-(pyrimidin-2-yl)acetamide
CAS 90158-72-8C7H6N4O
5-Bromo-2,4-dichloro-6-methylpyrimidine chemical structure, C5H3BrCl2N2, CAS 56745-01-8
5-Bromo-2,4-dichloro-6-methylpyrimidine
CAS 56745-01-8C5H3BrCl2N2
2-Hydrazinyl-N,5-dimethylpyrimidin-4-amine chemical structure, C6H11N5, CAS 329783-11-1
2-Hydrazinyl-N,5-dimethylpyrimidin-4-amine
CAS 329783-11-1C6H11N5
2-(Dimethylamino)-5-(nitro)-4-(methylamino)pyrimidine chemical structure, C7H11N5O2, CAS 13992-36-4
2-(Dimethylamino)-5-(nitro)-4-(methylamino)pyrimidine
CAS 13992-36-4C7H11N5O2
N-[1-(2,4-Dimethylpyrimidin-5-yl)ethylidene]hydroxylamine chemical structure, C8H11N3O, CAS 55933-87-4
N-[1-(2,4-Dimethylpyrimidin-5-yl)ethylidene]hydroxylamine
CAS 55933-87-4C8H11N3O
3-Methyl-2-(2-pyrimidinylthio)butanoic acid chemical structure, C9H12N2O2S, CAS 887585-72-0
3-Methyl-2-(2-pyrimidinylthio)butanoic acid
CAS 887585-72-0C9H12N2O2S
2-Hydrazinyl-N,6-dimethylpyrimidin-4-amine chemical structure, C6H11N5, CAS 388622-91-1
2-Hydrazinyl-N,6-dimethylpyrimidin-4-amine
CAS 388622-91-1C6H11N5
4,6-Dichloro-2-(methylsulfanyl)pyrimidine-5-carbaldehyde chemical structure, C6H4Cl2N2OS, CAS 33097-11-9
4,6-Dichloro-2-(methylsulfanyl)pyrimidine-5-carbaldehyde
CAS 33097-11-9C6H4Cl2N2OS
2,4-Diamino-6-(dimethylamino)-5-(nitro)pyrimidine chemical structure, C6H10N6O2, CAS 64805-09-0
2,4-Diamino-6-(dimethylamino)-5-(nitro)pyrimidine
CAS 64805-09-0C6H10N6O2
4,6-Dimethyl-2-((trifluoromethyl)thio)pyrimidine chemical structure, C7H7F3N2S, CAS 70558-90-6
4,6-Dimethyl-2-((trifluoromethyl)thio)pyrimidine
CAS 70558-90-6C7H7F3N2S
Ethyl 2-[(4,5-dimethoxy-2-pyrimidinyl)sulfanyl]propanoate chemical structure, C11H16N2O4S, CAS 866017-27-8
Ethyl 2-[(4,5-dimethoxy-2-pyrimidinyl)sulfanyl]propanoate
CAS 866017-27-8C11H16N2O4S
N-2-Pyrimidinylpropanamide chemical structure, C7H9N3O, CAS 16699-13-1
N-2-Pyrimidinylpropanamide
CAS 16699-13-1C7H9N3O
N4,N4-dibutyl-5-nitropyrimidine-4,6-diamine chemical structure, C12H21N5O2, CAS 307326-55-2
N4,N4-dibutyl-5-nitropyrimidine-4,6-diamine
CAS 307326-55-2C12H21N5O2
N4-butyl-N4-methyl-5-nitropyrimidine-4,6-diamine chemical structure, C9H15N5O2, CAS 450345-67-2
N4-butyl-N4-methyl-5-nitropyrimidine-4,6-diamine
CAS 450345-67-2C9H15N5O2
2-[(6-Methylpyrimidin-4-yl)amino]acetic acid chemical structure, C7H9N3O2, CAS 51163-63-4
2-[(6-Methylpyrimidin-4-yl)amino]acetic acid
CAS 51163-63-4C7H9N3O2
2-Pyrimidinemethanamine chemical structure, C5H7N3, CAS 75985-45-4
2-Pyrimidinemethanamine
CAS 75985-45-4C5H7N3
2-((5-Nitropyrimidin-2-yl)oxy)ethanol chemical structure, C6H7N3O4, CAS 321680-43-7
2-((5-Nitropyrimidin-2-yl)oxy)ethanol
CAS 321680-43-7C6H7N3O4
4-Amino-5-nitro-6-(methyloxy)-2-(methylsulfanyl)pyrimidine chemical structure, C6H8N4O3S, CAS 887570-45-8
4-Amino-5-nitro-6-(methyloxy)-2-(methylsulfanyl)pyrimidine
CAS 887570-45-8C6H8N4O3S
5-Pyrimidinethiol chemical structure, C4H4N2S, CAS 29878-64-6
5-Pyrimidinethiol
CAS 29878-64-6C4H4N2S
N-(2,6-Dichloropyrimidin-4-yl)acetamide chemical structure, C6H5Cl2N3O, CAS 89581-87-3
N-(2,6-Dichloropyrimidin-4-yl)acetamide
CAS 89581-87-3C6H5Cl2N3O