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Murcko scaffold

Pyrimidine scaffold

19,000 chemicals on CompoundList share this ring system.

Rings
1
Scaffold atoms
6
Chemicals
19,000
With full pages
2,066
Scaffold SMILES

c1cncnc1

A Bemis-Murcko scaffold is what remains of a molecule when every side chain is removed: the rings and the chains that link them. Chemicals that share a scaffold often belong to the same compound series, which helps when you look for analogues, alternative suppliers or related building blocks. This is a very common single ring, so the list below is broad.

Substructure search with this scaffoldOpen the Pyrimidine page
Murcko scaffold c1cncnc1

Computed from the structures of the chemicals listed here. Stereo and charges are removed before the scaffold is taken.

Chemicals with this scaffold

Open one to see its structure, properties and suppliers.

Showing 1,345 to 1,392 of 19,000 chemicals

Cetotiamine hydrochloride chemical structure, C18H27ClN4O6S, CAS 616-96-6
Cetotiamine hydrochloride
CAS 616-96-6C18H27ClN4O6S
Allithiamine chemical structure, C15H22N4O2S2, CAS 554-44-9
Allithiamine
CAS 554-44-9C15H22N4O2S2
2-Pyrimidineacetamide, 4,6-dimethylthio- chemical structure, C8H11N3S, CAS 25948-02-1
2-Pyrimidineacetamide, 4,6-dimethylthio-
CAS 25948-02-1C8H11N3S
Pyrimidine, 5-amino-2-butoxy- chemical structure, C8H13N3O, CAS 58443-14-4
Pyrimidine, 5-amino-2-butoxy-
CAS 58443-14-4C8H13N3O
4,6-Dimethylpyrimidin-2-yl thiocyanate chemical structure, C7H7N3S, CAS 55055-25-9
4,6-Dimethylpyrimidin-2-yl thiocyanate
CAS 55055-25-9C7H7N3S
2,4-Pyrimidinediamine, 6-chloro-N(sup 4)-(2-(diethylamino)ethyl)-N(sup 2),N(sup 2)-dimethyl-5-(methylthio)- chemical structure, C13H24ClN5S, CAS 55416-91-6
2,4-Pyrimidinediamine, 6-chloro-N(sup 4)-(2-(diethylamino)ethyl)-N(sup 2),N(sup 2)-dimethyl-5-(methylthio)-
CAS 55416-91-6C13H24ClN5S
2,4-Pyrimidinediamine, 6-chloro-N(sup 4)-(2-(diethylamino)ethyl)-N(sup 2),N(sup 2)-diethyl-5-(methylthio)-, dihydrobromide chemical structure, C15H30Br2ClN5S, CAS 55416-93-8
2,4-Pyrimidinediamine, 6-chloro-N(sup 4)-(2-(diethylamino)ethyl)-N(sup 2),N(sup 2)-diethyl-5-(methylthio)-, dihydrobromide
CAS 55416-93-8C15H30Br2ClN5S
2,4-Pyrimidinediamine, 6-chloro-N(sup 4)-(2-(dimethylamino)ethyl)-N(sup 2),N(sup 2)-dimethyl-5-(methylthio)- chemical structure, C11H20ClN5S, CAS 55416-97-2
2,4-Pyrimidinediamine, 6-chloro-N(sup 4)-(2-(dimethylamino)ethyl)-N(sup 2),N(sup 2)-dimethyl-5-(methylthio)-
CAS 55416-97-2C11H20ClN5S
Glycine, N-(4-chloro-6-((2-(dimethylamino)ethyl)amino)-5-(methylthio)-2-pyrimidinyl)-N-methyl-, ethyl ester chemical structure, C14H24ClN5O2S, CAS 55416-99-4
Glycine, N-(4-chloro-6-((2-(dimethylamino)ethyl)amino)-5-(methylthio)-2-pyrimidinyl)-N-methyl-, ethyl ester
CAS 55416-99-4C14H24ClN5O2S
Glycine, N-(4-((2-(bis(1-methylethyl)amino)ethyl)amino)-6-chloro-5-(methylthio)-2-pyrimidinyl)-N-methyl, ethyl ester, monohydrobromide chemical structure, C18H33BrClN5O2S, CAS 55417-04-4
Glycine, N-(4-((2-(bis(1-methylethyl)amino)ethyl)amino)-6-chloro-5-(methylthio)-2-pyrimidinyl)-N-methyl, ethyl ester, monohydrobromide
CAS 55417-04-4C18H33BrClN5O2S
2,4-Pyrimidinediamine, N(sup 4)-(2-(bis(1-methylethyl)amino)ethyl)-6-chloro-N(sup 2),N(sup 2)-diethyl-5-(methylthio)-, monohydrobromide chemical structure, C17H33BrClN5S, CAS 55417-05-5
2,4-Pyrimidinediamine, N(sup 4)-(2-(bis(1-methylethyl)amino)ethyl)-6-chloro-N(sup 2),N(sup 2)-diethyl-5-(methylthio)-, monohydrobromide
CAS 55417-05-5C17H33BrClN5S
2,4-Pyrimidinediamine, 6-chloro-N(sup 4)-(2-(diethylamino)ethyl)-5-(methylthio)-N(sup 2), N(sup 2)-dipropyl-, dihydrobromide chemical structure, C17H34Br2ClN5S, CAS 55474-01-6
2,4-Pyrimidinediamine, 6-chloro-N(sup 4)-(2-(diethylamino)ethyl)-5-(methylthio)-N(sup 2), N(sup 2)-dipropyl-, dihydrobromide
CAS 55474-01-6C17H34Br2ClN5S
Acetamide, N-(4,6-dichloro-5-methyl-2-pyrimidinyl)- chemical structure, C7H7Cl2N3O, CAS 55477-37-7
Acetamide, N-(4,6-dichloro-5-methyl-2-pyrimidinyl)-
CAS 55477-37-7C7H7Cl2N3O
2-Pyrimidinamine, 4,6-bis(3-(dimethylamino)propoxy)-N,N-diethyl-5-(methylthio)-, dihydrobromide chemical structure, C19H39Br2N5O2S, CAS 57259-25-3
2-Pyrimidinamine, 4,6-bis(3-(dimethylamino)propoxy)-N,N-diethyl-5-(methylthio)-, dihydrobromide
CAS 57259-25-3C19H39Br2N5O2S
2-Pyrimidinamine, 4,6-bis(2-(dimethylamino)ethoxy)-N,N-diethyl-5-(methylthio)-, dihydrobromide chemical structure, C17H35Br2N5O2S, CAS 57259-26-4
2-Pyrimidinamine, 4,6-bis(2-(dimethylamino)ethoxy)-N,N-diethyl-5-(methylthio)-, dihydrobromide
CAS 57259-26-4C17H35Br2N5O2S
2-Pyrimidinamine, 4,6-bis(2-(bis(1-methylethyl)amino)ethoxy)-N,N-diethyl-5-(methylthio)-, dihydrobromide chemical structure, C25H51Br2N5O2S, CAS 57259-27-5
2-Pyrimidinamine, 4,6-bis(2-(bis(1-methylethyl)amino)ethoxy)-N,N-diethyl-5-(methylthio)-, dihydrobromide
CAS 57259-27-5C25H51Br2N5O2S
2-Pyrimidinamine, N-(1-methylethyl)-, dichloroacetate chemical structure, C9H13Cl2N3O2, CAS 65567-05-7
2-Pyrimidinamine, N-(1-methylethyl)-, dichloroacetate
CAS 65567-05-7C9H13Cl2N3O2
4(1H)-Pyrimidinone, 2,6-dimethyl-, hydrazone, monohydrochloride chemical structure, C6H11ClN4, CAS 71308-94-6
4(1H)-Pyrimidinone, 2,6-dimethyl-, hydrazone, monohydrochloride
CAS 71308-94-6C6H11ClN4
2,4-Pyrimidinediamine, 6-chloro-, monohydrochloride chemical structure, C4H6Cl2N4, CAS 71340-69-7
2,4-Pyrimidinediamine, 6-chloro-, monohydrochloride
CAS 71340-69-7C4H6Cl2N4
5-Pyrimidinecarboxamide, 2-amino-N-(2-(diethylamino)ethyl)-4-methoxy- chemical structure, C12H21N5O2, CAS 72429-53-9
5-Pyrimidinecarboxamide, 2-amino-N-(2-(diethylamino)ethyl)-4-methoxy-
CAS 72429-53-9C12H21N5O2
Phosphonic acid, (6-amino-5-nitro-4-pyrimidinyl)-, dimethyl ester chemical structure, C6H9N4O5P, CAS 72900-79-9
Phosphonic acid, (6-amino-5-nitro-4-pyrimidinyl)-, dimethyl ester
CAS 72900-79-9C6H9N4O5P
Phosphonic acid, (5-nitro-4,6-pyrimidinediyl)bis-, tetramethyl ester chemical structure, C8H13N3O8P2, CAS 72900-83-5
Phosphonic acid, (5-nitro-4,6-pyrimidinediyl)bis-, tetramethyl ester
CAS 72900-83-5C8H13N3O8P2
Phosphonic acid, (2-chloro-5-nitro-4-pyrimidinyl)-, dimethyl ester chemical structure, C6H7ClN3O5P, CAS 72900-86-8
Phosphonic acid, (2-chloro-5-nitro-4-pyrimidinyl)-, dimethyl ester
CAS 72900-86-8C6H7ClN3O5P
Hydrazine, (2-amino-5-methyl-4-pyrimidinyl)-, hydrochloride chemical structure, C5H10ClN5, CAS 74038-72-5
Hydrazine, (2-amino-5-methyl-4-pyrimidinyl)-, hydrochloride
CAS 74038-72-5C5H10ClN5