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Murcko scaffold

Pyrimidine scaffold

19,000 chemicals on CompoundList share this ring system.

Rings
1
Scaffold atoms
6
Chemicals
19,000
With full pages
2,066
Scaffold SMILES

c1cncnc1

A Bemis-Murcko scaffold is what remains of a molecule when every side chain is removed: the rings and the chains that link them. Chemicals that share a scaffold often belong to the same compound series, which helps when you look for analogues, alternative suppliers or related building blocks. This is a very common single ring, so the list below is broad.

Substructure search with this scaffoldOpen the Pyrimidine page
Murcko scaffold c1cncnc1

Computed from the structures of the chemicals listed here. Stereo and charges are removed before the scaffold is taken.

Chemicals with this scaffold

Open one to see its structure, properties and suppliers.

Showing 1,393 to 1,440 of 19,000 chemicals

5-Pyrimidinecarboxamide, 2-amino-N-(3-(dimethylamino)propyl)-4-methoxy- chemical structure, C11H19N5O2, CAS 84332-09-2
5-Pyrimidinecarboxamide, 2-amino-N-(3-(dimethylamino)propyl)-4-methoxy-
CAS 84332-09-2C11H19N5O2
5-Pyrimidinecarboxamide, 2-amino-N-(3-(diethylamino)propyl)-4-methoxy- chemical structure, C13H23N5O2, CAS 84332-10-5
5-Pyrimidinecarboxamide, 2-amino-N-(3-(diethylamino)propyl)-4-methoxy-
CAS 84332-10-5C13H23N5O2
5-Pyrimidinecarboxamide, 2-amino-N-(2-(diethylamino)propyl)-4-methoxy- chemical structure, C13H23N5O2, CAS 84332-11-6
5-Pyrimidinecarboxamide, 2-amino-N-(2-(diethylamino)propyl)-4-methoxy-
CAS 84332-11-6C13H23N5O2
4-Pyrimidinamine, 6-chloro-N,2-dimethyl-5-(2-propenyl)- chemical structure, C9H12ClN3, CAS 85826-35-3
4-Pyrimidinamine, 6-chloro-N,2-dimethyl-5-(2-propenyl)-
CAS 85826-35-3C9H12ClN3
4-Pyrimidinamine, 6-chloro-5-(2,3-dibromopropyl)-2-methyl- chemical structure, C8H10Br2ClN3, CAS 85826-38-6
4-Pyrimidinamine, 6-chloro-5-(2,3-dibromopropyl)-2-methyl-
CAS 85826-38-6C8H10Br2ClN3
6-Chloro-5-(2,3-dibromopropyl)-N,2-dimethylpyrimidin-4(3H)-imine chemical structure, C9H12Br2ClN3, CAS 85826-39-7
6-Chloro-5-(2,3-dibromopropyl)-N,2-dimethylpyrimidin-4(3H)-imine
CAS 85826-39-7C9H12Br2ClN3
Ethanol, 2-((6-chloro-5-(2,3-dibromopropyl)-2-methyl-4-pyrimidinyl)amino)- chemical structure, C10H14Br2ClN3O, CAS 85826-40-0
Ethanol, 2-((6-chloro-5-(2,3-dibromopropyl)-2-methyl-4-pyrimidinyl)amino)-
CAS 85826-40-0C10H14Br2ClN3O
Acetiamine hydrochloride chemical structure, C16H23ClN4O4S, CAS 28008-04-0
Acetiamine hydrochloride
CAS 28008-04-0C16H23ClN4O4S
Phosphorothioic acid, S-(4-pyrimidinylmethyl) ester, dilithium salt, monohydrate chemical structure, C5H5Li2N2O3PS, CAS 119395-99-2
Phosphorothioic acid, S-(4-pyrimidinylmethyl) ester, dilithium salt, monohydrate
CAS 119395-99-2C5H5Li2N2O3PS
Pyrimidine-4-methanethiol, hydrochloride chemical structure, C5H7ClN2S, CAS 119396-01-9
Pyrimidine-4-methanethiol, hydrochloride
CAS 119396-01-9C5H7ClN2S
4-Pyrimidinemethanethiol chemical structure, C5H6N2S, CAS 119979-37-2
4-Pyrimidinemethanethiol
CAS 119979-37-2C5H6N2S
2,2-Dimethyl-N-[2,2,2-trichloro-1-(2-pyrimidinylthio)ethyl]propanamide chemical structure, C11H14Cl3N3OS, CAS 162331-10-4
2,2-Dimethyl-N-[2,2,2-trichloro-1-(2-pyrimidinylthio)ethyl]propanamide
CAS 162331-10-4C11H14Cl3N3OS
4-Amino-6-[(1,1-dimethylethyl)amino]-5-nitropyrimidine chemical structure, C8H13N5O2, CAS 306321-47-1
4-Amino-6-[(1,1-dimethylethyl)amino]-5-nitropyrimidine
CAS 306321-47-1C8H13N5O2
5-Nitro-2,4,6-triaminopyrimidine chemical structure, C4H6N6O2, CAS 24867-36-5
5-Nitro-2,4,6-triaminopyrimidine
CAS 24867-36-5C4H6N6O2
Guanidine, (4,6-dimethyl-2-pyrimidinyl)- chemical structure, C7H11N5, CAS 94828-49-6
Guanidine, (4,6-dimethyl-2-pyrimidinyl)-
CAS 94828-49-6C7H11N5
N-(4,6-Dimethylpyrimidin-2-yl)-N''-hydroxyguanidine chemical structure, C7H11N5O
N-(4,6-Dimethylpyrimidin-2-yl)-N''-hydroxyguanidine
C7H11N5O
4-Amino-2-(butylthio)-5-pyrimidinecarboxylic acid ethyl ester chemical structure, C11H17N3O2S, CAS 116218-70-3
4-Amino-2-(butylthio)-5-pyrimidinecarboxylic acid ethyl ester
CAS 116218-70-3C11H17N3O2S
2-(4,6-Diamino-pyrimidin-2-ylsulfanyl)-butyric acid chemical structure, C8H12N4O2S, CAS 436088-61-8
2-(4,6-Diamino-pyrimidin-2-ylsulfanyl)-butyric acid
CAS 436088-61-8C8H12N4O2S
2-(Methylthio)-5-pyrimidinecarbaldehyde chemical structure, C6H6N2OS, CAS 90905-31-0
2-(Methylthio)-5-pyrimidinecarbaldehyde
CAS 90905-31-0C6H6N2OS
2-Methoxypyrimidine-5-carboxaldehyde chemical structure, C6H6N2O2, CAS 90905-32-1
2-Methoxypyrimidine-5-carboxaldehyde
CAS 90905-32-1C6H6N2O2
(2,4-Dimethoxy-6-methyl-pyrimidin-5-yl)-acetic acid chemical structure, C9H12N2O4, CAS 500159-48-8
(2,4-Dimethoxy-6-methyl-pyrimidin-5-yl)-acetic acid
CAS 500159-48-8C9H12N2O4
4-Chloro-2,6-dimethylpyrimidine chemical structure, C6H7ClN2, CAS 4472-45-1
4-Chloro-2,6-dimethylpyrimidine
CAS 4472-45-1C6H7ClN2
5-Allyl-4-chloro-6-methyl-pyrimidin-2-ylamine chemical structure, C8H10ClN3, CAS 23497-43-0
5-Allyl-4-chloro-6-methyl-pyrimidin-2-ylamine
CAS 23497-43-0C8H10ClN3
2-(2,4-Diethoxy-6-methylpyrimidin-5-yl)acetic acid chemical structure, C11H16N2O4, CAS 500159-50-2
2-(2,4-Diethoxy-6-methylpyrimidin-5-yl)acetic acid
CAS 500159-50-2C11H16N2O4